CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
cassava33952.m1
(
Manihot esculenta
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
cassava33952.m1
T246465_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.970
0.970
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.768
0.768
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava33952.m1
LOB
12
110
PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANA
Links
Other
LOB
family TFs
Other
Manihot esculenta
TFs
325 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Afo_R014691
Aptenodytes forsteri
Afo_R014691
N
Alligator_sinensis_CCG014704.1
Alligator sinensis
Alligator_sinensis_CCG014704.1
N
Brh_R013849
Buceros rhinoceros
Brh_R013849
N
Cmyd_10011645
Chelonia mydas
Cmyd_10011645
N
ZBTB47
Anolis carolinensis
ENSACAG00000006705
N
ENSAMEG00000012484
Ailuropoda melanoleuca
ENSAMEG00000012484
N
ENSAMXG00000014869
Astyanax mexicanus
ENSAMXG00000014869
N
ENSAPLG00000012656
Anas platyrhynchos
ENSAPLG00000012656
N
ZBTB47
Bos taurus
ENSBTAG00000017365
N
ENSBTAP00000023089-D1
Bos grunniens
ENSBTAP00000023089-D1
N
ZBTB47
Canis familiaris
ENSCAFG00000030889
N
ZBTB47
Callithrix jacchus
ENSCJAG00000018096
N
ZBTB47
Cavia porcellus
ENSCPOG00000025338
N
ENSCSAG00000016763
Chlorocebus sabaeus
ENSCSAG00000016763
N
zbtb47a
Danio rerio
ENSDARG00000057751
N
zbtb47b
Danio rerio
ENSDARG00000079547
N
ENSFALG00000001000
Ficedula albicollis
ENSFALG00000001000
N
ZBTB47
Felis catus
ENSFCAG00000000532
N
ZBTB47
Homo sapiens
ENSG00000114853
N
ENSGALG00000005287
Gallus gallus
ENSGALG00000005287
N
ZBTB47
Gorilla gorilla
ENSGGOG00000000433
N
ZBTB47
Loxodonta africana
ENSLAFG00000003570
N
ENSLOCG00000009647
Lepisosteus oculatus
ENSLOCG00000009647
N
ENSMEUG00000013550
Macropus eugenii
ENSMEUG00000013550
N
ZBTB47
Meleagris gallopavo
ENSMGAG00000002353
N
ENSMICG00000009286
Microcebus murinus
ENSMICG00000009286
N
ZBTB47
Monodelphis domestica
ENSMODG00000013582
N
ENSMPUG00000011833
Mustela putorius furo
ENSMPUG00000011833
N
Zfp651
Mus musculus
ENSMUSG00000013419
N
ENSOARG00000003667
Ovis aries
ENSOARG00000003667
N
ZBTB47
Oryctolagus cuniculus
ENSOCUG00000020899
N
ENSONIG00000005797
Oreochromis niloticus
ENSONIG00000005797
N
ENSORLG00000009398
Oryzias latipes
ENSORLG00000009398
N
ENSPANG00000008922
Papio anubis
ENSPANG00000008922
N
ENSPFOG00000004330
Poecilia formosa
ENSPFOG00000004330
N
ENSPPYG00000029781
Pongo abelii
ENSPPYG00000029781
N
ENSPSIG00000018010
Pelodiscus sinensis
ENSPSIG00000018010
N
Zbtb47
Rattus norvegicus
ENSRNOG00000019382
N
ENSSHAG00000007698
Sarcophilus harrisii
ENSSHAG00000007698
N
ZBTB47
Sus scrofa
ENSSSCG00000030065
N
ENSSTOG00000003116
Ictidomys tridecemlineatus
ENSSTOG00000003116
N
zbtb47b
Tetraodon nigroviridis
ENSTNIG00000001401
N
zbtb47b
Takifugu rubripes
ENSTRUG00000017575
N
ENSXMAG00000009463
Xiphophorus maculatus
ENSXMAG00000009463
N
Ogr00204
Ophisaurus gracilis
Ogr00204
N
zbtb47
Xenopus tropicalis
XB-GENE-992955
N