cassava40961.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava40961.m1 T246477_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava40961.m1 LOB 61 159

Links

Other LOB family TFs
Other Manihot esculenta TFs

306 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000424101 Angiostrongylus costaricensis ACOC_0000424101 I
ANCCEY_07004 Ancylostoma ceylanicum ANCCEY_07004 I
ASU_12730 Ascaris suum ASU_12730 N
CBN06159 Caenorhabditis brenneri CBN06159 I
CBN13709 Caenorhabditis brenneri CBN13709 I
CJA05669 Caenorhabditis japonica CJA05669 I
CRE02259 Caenorhabditis remanei CRE02259 I
EVEC_0000289301 Enterobius vermicularis EVEC_0000289301 N
L596_g5847 Steinernema carpocapsae L596_g5847 N
L889_g20553 Steinernema feltiae L889_g20553 N
L892_g17246 Steinernema scapterisci L892_g17246 N
L893_g9725 Steinernema glaseri L893_g9725 N
NECAME_12135 Necator americanus NECAME_12135 I
PEQ_0000995301 Parascaris equorum PEQ_0000995301 N
TCNE_0001756201 Toxocara canis TCNE_0001756201 N
TELCIR_00741 Teladorsagia circumcincta TELCIR_00741 I