CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cucsa.052720
(
Cucumis sativus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Cucsa.052720
T246494_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.052720.1
LOB
37
135
PCAACKILRRRCAERCVLAPYFPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQKQVNELQAQLAKAQA
Links
Other
LOB
family TFs
Other
Cucumis sativus
TFs
325 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000010576
Ailuropoda melanoleuca
ENSAMEG00000010576
I
ENSBTAP00000007323-D1
Bos grunniens
ENSBTAP00000007323-D1
I
ZNF205
Bos taurus
ENSBTAG00000005572
I
ZNF205
Canis familiaris
ENSCAFG00000023869
I
ENSCSAG00000010150
Chlorocebus sabaeus
ENSCSAG00000010150
I
ZNF205
Dasypus novemcinctus
ENSDNOG00000037994
I
ENSETEG00000002476
Echinops telfairi
ENSETEG00000002476
I
ZNF205
Equus caballus
ENSECAG00000009869
I
ZNF205
Erinaceus europaeus
ENSEEUG00000010049
I
ZNF205
Felis catus
ENSFCAG00000026028
I
ZNF205
Gorilla gorilla
ENSGGOG00000012036
I
ZNF205
Homo sapiens
ENSG00000122386
D
ENSSTOG00000003803
Ictidomys tridecemlineatus
ENSSTOG00000003803
I
ZNF205
Loxodonta africana
ENSLAFG00000021564
I
ENSP00000219091
Macaca fascicularis
ENSP00000219091
I
ZNF205
Macaca mulatta
ENSMMUG00000009487
I
ENSMEUG00000004328
Macropus eugenii
ENSMEUG00000004328
I
ZNF205
Microcebus murinus
ENSMICG00000009089
I
ENSMPUG00000015184
Mustela putorius furo
ENSMPUG00000015184
I
Zfp13
Mus musculus
ENSMUSG00000062012
I
Myotis_brandtii_ZNF205_10028065
Myotis brandtii
Myotis_brandtii_ZNF205_10028065
I
ENSNLEG00000009600
Nomascus leucogenys
ENSNLEG00000009600
I
ZNF205
Ochotona princeps
ENSOPRG00000005820
I
ZNF205
Otolemur garnettii
ENSOGAG00000003693
I
ENSOARG00000001319
Ovis aries
ENSOARG00000001319
I
ZNF205
Pan troglodytes
ENSPTRG00000007686
I
ENSPANG00000024398
Papio anubis
ENSPANG00000024398
I
ENSPPYG00000007034
Pongo abelii
ENSPPYG00000007034
I
ZNF205
Pteropus vampyrus
ENSPVAG00000001475
I
Zfp13
Rattus norvegicus
ENSRNOG00000003455
I
ZNF205
Sorex araneus
ENSSARG00000006551
I
ZNF205
Sus scrofa
ENSSSCG00000029375
I