Cagra.1671s0259 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.1671s0259 T246727_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD2
M06953_2.00 		Arabidopsis thaliana
SCGANRAWDNCGGHR
YDCCGNHWTYNTCGS		 Dap-seq
OMalley et al.(2016)
LBD2_col_a 		1.000 1.000
LBD2
M06954_2.00 		Arabidopsis thaliana
SCGANAAWNTCGGDN
NHCCGANWTTNTCGS		 Dap-seq
OMalley et al.(2016)
LBD2_colamp_a 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1671s0259.1.p LOB 26 122

Links

Other LOB family TFs
Other Capsella grandiflora TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD2 Arabidopsis thaliana AT1G06280 D 1.000
LBD2 Arabidopsis lyrata scaffold_100624.1 I 1.000
Bostr.25219s0329 Boechera stricta Bostr.25219s0329 I 1.000
Carubv10011711m.g Capsella rubella Carubv10011711m.g I 1.000
Thhalv10008796m.g Eutrema salsugineum Thhalv10008796m.g I 0.990
Bo8g006050 Brassica oleracea Bo8g006050 I 0.969
Bo8g114670 Brassica oleracea Bo8g114670 I 0.959
Bra030647 Brassica rapa Bra030647 I 0.959
Bra032430 Brassica rapa Bra032430 I 0.918