CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10014142m.g
(
Capsella rubella
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Carubv10014142m.g
T246761_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10014142m
LOB
102
200
ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIRKLQYQIEYTRNELEIVLQ
Carubv10014396m
LOB
35
133
ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIRKLQYQIEYTRNELEIVLQ
Links
Other
LOB
family TFs
Other
Capsella rubella
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28694.m000665
Ricinus communis
28694.m000665
N
0.798
LBD22
Arabidopsis thaliana
AT3G13850
N
0.990
Bo1g134830
Brassica oleracea
Bo1g134830
N
0.879
Bo5g132010
Brassica oleracea
Bo5g132010
N
0.869
Bostr.28625s0323
Boechera stricta
Bostr.28625s0323
N
0.990
Bra021513
Brassica rapa
Bra021513
N
0.879
Bra027392
Brassica rapa
Bra027392
N
0.762
Cagra.0736s0021
Capsella grandiflora
Cagra.0736s0021
N
0.990
cassava2716.m1
Manihot esculenta
cassava2716.m1
N
0.788
cassava34925.m1
Manihot esculenta
cassava34925.m1
N
0.798
cassava34926.m1
Manihot esculenta
cassava34926.m1
N
0.798
Ca_10077
Cicer arietinum
Ca_10077
N
0.768
chr3.CM0049.30.nd
Lotus japonicus
chr3.CM0049.30.nd
N
0.768
Cla015827
Citrullus lanatus
Cla015827
N
0.798
Cucsa.360530
Cucumis sativus
Cucsa.360530
N
0.798
evm.TU.supercontig_25.41
Carica papaya
evm.TU.supercontig_25.41
N
0.768
LBD22
Arabidopsis lyrata
fgenesh2_kg.3__1489__AT3G13850.1
N
0.990
gene23043-v1.0-hybrid
Fragaria vesca
gene23043-v1.0-hybrid
N
0.727
GLYMA07G01170
Glycine max
GLYMA07G01170
N
0.788
GLYMA08G20550
Glycine max
GLYMA08G20550
N
0.778
Gorai.011G064500
Gossypium raimondii
Gorai.011G064500
N
0.808
MDP0000257227
Malus domestica
MDP0000257227
N
0.778
mgf019664m
Mimulus guttatus
mgf019664m
N
0.747
MTR_8g017090
Medicago truncatula
MTR_8g017090
N
0.778
PGSC0003DMG400004880
Solanum tuberosum
PGSC0003DMG400004880
N
0.768
Pm013344
Prunus mume
Pm013344
N
0.768
POPTR_0001s20110
Populus trichocarpa
POPTR_0001s20110
N
0.808
POPTR_0003s04520
Populus trichocarpa
POPTR_0003s04520
N
0.808
SapurV1A.0697s0010
Salix purpurea
SapurV1A.0697s0010
N
0.788
Solyc06g062630.2
Solanum lycopersicum
Solyc06g062630.2
N
0.814
TCM_029050
Theobroma cacao
TCM_029050
N
0.758
TCM_029052
Theobroma cacao
TCM_029052
N
0.818
Thhalv10021306m.g
Eutrema salsugineum
Thhalv10021306m.g
N
0.929