CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10021721m.g
(
Capsella rubella
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Carubv10021721m.g
T246778_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10021721m
LOB
4
107
SCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGS
Links
Other
LOB
family TFs
Other
Capsella rubella
TFs
190 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD40
Arabidopsis thaliana
AT1G67100
N
1.000
Cagra.6164s0006
Capsella grandiflora
Cagra.6164s0006
N
1.000
LBD40
Arabidopsis lyrata
Al_scaffold_0002_1337
N
0.990
Bostr.26959s0198
Boechera stricta
Bostr.26959s0198
N
0.990
Bo2g055410
Brassica oleracea
Bo2g055410
N
0.980
Thhalv10019048m.g
Eutrema salsugineum
Thhalv10019048m.g
N
0.980
AMTR_s00079p00088960
Amborella trichopoda
AMTR_s00079p00088960
N
0.929
GSMUA_Achr3G29520_001
Musa acuminata
GSMUA_Achr3G29520_001
N
0.929
GSMUA_Achr4G13790_001
Musa acuminata
GSMUA_Achr4G13790_001
N
0.929
Cla007208
Citrullus lanatus
Cla007208
N
0.929
Cucsa.031350
Cucumis sativus
Cucsa.031350
N
0.929
cassava6185.valid.m1
Manihot esculenta
cassava6185.valid.m1
N
0.918
MTR_7g007010
Medicago truncatula
MTR_7g007010
N
0.909
POPTR_0004s09920
Populus trichocarpa
POPTR_0004s09920
N
0.909
TCM_019459
Theobroma cacao
TCM_019459
N
0.909
Aquca_026_00293
Aquilegia coerulea
Aquca_026_00293
N
0.909
evm.TU.supercontig_282.15
Carica papaya
evm.TU.supercontig_282.15
N
0.909
SapurV1A.0315s0090
Salix purpurea
SapurV1A.0315s0090
N
0.909
PK03169.1
Cannabis sativa
PK03169.1
N
0.909
chr1.LjT23D08.90.nc
Lotus japonicus
chr1.LjT23D08.90.nc
N
0.909
Eucgr.J01501
Eucalyptus grandis
Eucgr.J01501
N
0.908
GLYMA08G48040
Glycine max
GLYMA08G48040
N
0.899
POPTR_0005s15670
Populus trichocarpa
POPTR_0005s15670
N
0.899
PRUPE_ppa009213mg
Prunus persica
PRUPE_ppa009213mg
N
0.899
Gorai.008G056000
Gossypium raimondii
Gorai.008G056000
N
0.899
Thhalv10021328m.g
Eutrema salsugineum
Thhalv10021328m.g
N
0.899
GSMUA_Achr4G06820_001
Musa acuminata
GSMUA_Achr4G06820_001
N
0.898
GSMUA_Achr9G21360_001
Musa acuminata
GSMUA_Achr9G21360_001
N
0.898
Bo3g055690
Brassica oleracea
Bo3g055690
N
0.889
Bra021433
Brassica rapa
Bra021433
N
0.889
GLYMA13G07590
Glycine max
GLYMA13G07590
N
0.889
GLYMA18G53440
Glycine max
GLYMA18G53440
N
0.889
PGSC0003DMG400012653
Solanum tuberosum
PGSC0003DMG400012653
N
0.889
Solyc02g085910.2
Solanum lycopersicum
Solyc02g085910.2
N
0.889
VIT_14s0006g02950
Vitis vinifera
VIT_14s0006g02950
N
0.889
cassava60.valid.m1
Manihot esculenta
cassava60.valid.m1
N
0.889
Bostr.1460s0172
Boechera stricta
Bostr.1460s0172
N
0.889
Cagra.1194s0049
Capsella grandiflora
Cagra.1194s0049
N
0.889
Carubv10015363m.g
Capsella rubella
Carubv10015363m.g
N
0.889
Ciclev10013705m.g
Citrus clementina
Ciclev10013705m.g
N
0.889
Lus10028470.g
Linum usitatissimum
Lus10028470.g
N
0.889
MDP0000136037
Malus domestica
MDP0000136037
N
0.889
orange1.1g022591m.g
Citrus sinensis
orange1.1g022591m.g
N
0.889
LBD41
Arabidopsis thaliana
AT3G02550
N
0.879
Bo1g156310
Brassica oleracea
Bo1g156310
N
0.879
LBD41
Arabidopsis lyrata
fgenesh2_kg.3__191__AT3G02550.1
N
0.879
GLYMA19G06280
Glycine max
GLYMA19G06280
N
0.879
GSMUA_Achr4G03700_001
Musa acuminata
GSMUA_Achr4G03700_001
N
0.879
mgf011656m
Mimulus guttatus
mgf011656m
N
0.879
gene10300-v1.0-hybrid
Fragaria vesca
gene10300-v1.0-hybrid
N
0.879
GSMUA_AchrUn_randomG00460_001
Musa acuminata
GSMUA_AchrUn_randomG00460_001
N
0.869
mgf010898m
Mimulus guttatus
mgf010898m
N
0.867
BGIOSGA001546
Oryza indica
BGIOSGA001546
N
0.859
LPERR01G15290
Leersia perrieri
LPERR01G15290
N
0.859
MLOC_58304
Hordeum vulgare
MLOC_58304
N
0.859
MTR_6g018270
Medicago truncatula
MTR_6g018270
N
0.859
OBART01G17510
Oryza barthii
OBART01G17510
N
0.859
OGLUM01G20320
Oryza glumaepatula
OGLUM01G20320
N
0.859
OMERI01G16320
Oryza meridionalis
OMERI01G16320
N
0.859
ONIVA01G19320
Oryza nivara
ONIVA01G19320
N
0.859
OPUNC01G18000
Oryza punctata
OPUNC01G18000
N
0.859
ORUFI01G19440
Oryza rufipogon
ORUFI01G19440
N
0.859
OS01G0511000
Oryza sativa
OS01G0511000
N
0.859
Traes_2AL_450404EA6
Triticum aestivum
Traes_2AL_450404EA6
N
0.859
Traes_2BL_3A840DB921
Triticum aestivum
Traes_2BL_3A840DB921
N
0.859
Traes_2DL_9D8B5B436
Triticum aestivum
Traes_2DL_9D8B5B436
N
0.859
VIT_01s0011g03540
Vitis vinifera
VIT_01s0011g03540
N
0.859
Carubv10002654m.g
Capsella rubella
Carubv10002654m.g
N
0.848
Ciclev10022068m.g
Citrus clementina
Ciclev10022068m.g
N
0.848
orange1.1g038007m.g
Citrus sinensis
orange1.1g038007m.g
N
0.848
GSMUA_Achr9G00580_001
Musa acuminata
GSMUA_Achr9G00580_001
N
0.838
PGSC0003DMG400005719
Solanum tuberosum
PGSC0003DMG400005719
N
0.838
Solyc03g119530.2
Solanum lycopersicum
Solyc03g119530.2
N
0.838
Cagra.6845s0054
Capsella grandiflora
Cagra.6845s0054
N
0.838
Carubv10000015m.g
Capsella rubella
Carubv10000015m.g
N
0.838
Eucgr.G02321
Eucalyptus grandis
Eucgr.G02321
N
0.838
Bostr.2902s0344
Boechera stricta
Bostr.2902s0344
N
0.837
BRADI4G16740
Brachypodium distachyon
BRADI4G16740
N
0.828
BRADI4G16750
Brachypodium distachyon
BRADI4G16750
N
0.828
Sb01g032580
Sorghum bicolor
Sb01g032580
N
0.828
Cla019264
Citrullus lanatus
Cla019264
N
0.828
Cucsa.199060
Cucumis sativus
Cucsa.199060
N
0.828
OMERI01G01380
Oryza meridionalis
OMERI01G01380
N
0.827
cassava38982.m1
Manihot esculenta
cassava38982.m1
N
0.827
cassava43296.valid.m1
Manihot esculenta
cassava43296.valid.m1
N
0.827
Pavir.Ea01295
Panicum virgatum
Pavir.Ea01295
N
0.827
GRMZM2G060544
Zea mays
GRMZM2G060544
N
0.818
TCM_009888
Theobroma cacao
TCM_009888
N
0.818
Ca_22996
Cicer arietinum
Ca_22996
N
0.818
BGIOSGA002703
Oryza indica
BGIOSGA002703
N
0.816
LPERR01G01830
Leersia perrieri
LPERR01G01830
N
0.816
OB01G11830
Oryza brachyantha
OB01G11830
N
0.816
OBART01G01940
Oryza barthii
OBART01G01940
N
0.816
OGLUM01G02100
Oryza glumaepatula
OGLUM01G02100
N
0.816
ONIVA01G02110
Oryza nivara
ONIVA01G02110
N
0.816
OPUNC01G01670
Oryza punctata
OPUNC01G01670
N
0.816
ORGLA01G0016600
Oryza glaberrima
ORGLA01G0016600
N
0.816
ORUFI01G02010
Oryza rufipogon
ORUFI01G02010
N
0.816
Sb03g007270
Sorghum bicolor
Sb03g007270
N
0.816
VIT_17s0000g03720
Vitis vinifera
VIT_17s0000g03720
N
0.816
Pavir.J11724
Panicum virgatum
Pavir.J11724
N
0.816
Thhalv10019494m.g
Eutrema salsugineum
Thhalv10019494m.g
N
0.816
PGSC0003DMG400014547
Solanum tuberosum
PGSC0003DMG400014547
N
0.808
POPTR_0008s11950
Populus trichocarpa
POPTR_0008s11950
N
0.808
Si022660m.g
Setaria italica
Si022660m.g
N
0.808
TCM_012338
Theobroma cacao
TCM_012338
N
0.808
28207.m000107
Ricinus communis
28207.m000107
N
0.808
Bostr.26959s0040
Boechera stricta
Bostr.26959s0040
N
0.808
Eucgr.F02492
Eucalyptus grandis
Eucgr.F02492
N
0.808
SapurV1A.0851s0010
Salix purpurea
SapurV1A.0851s0010
N
0.808
Pavir.J01483
Panicum virgatum
Pavir.J01483
N
0.806
Bra004315
Brassica rapa
Bra004315
N
0.804
Cagra.3364s0006
Capsella grandiflora
Cagra.3364s0006
N
0.804
Carubv10022391m.g
Capsella rubella
Carubv10022391m.g
N
0.804
GSMUA_Achr2G22720_001
Musa acuminata
GSMUA_Achr2G22720_001
N
0.800
LBD42
Arabidopsis thaliana
AT1G68510
N
0.798
LBD42
Arabidopsis lyrata
fgenesh2_kg.2__1100__AT1G68510.1
N
0.798
GRMZM2G132693
Zea mays
GRMZM2G132693
N
0.798
Solyc05g009320.2
Solanum lycopersicum
Solyc05g009320.2
N
0.798
Eucgr.K02222
Eucalyptus grandis
Eucgr.K02222
N
0.798
evm.TU.supercontig_3.514
Carica papaya
evm.TU.supercontig_3.514
N
0.798
Pavir.Eb02390
Panicum virgatum
Pavir.Eb02390
N
0.798
Sb09g030780
Sorghum bicolor
Sb09g030780
N
0.796
gene03741-v1.0-hybrid
Fragaria vesca
gene03741-v1.0-hybrid
N
0.796
Gorai.005G190300
Gossypium raimondii
Gorai.005G190300
N
0.796
Bo6g106960
Brassica oleracea
Bo6g106960
N
0.794
PK04625.1
Cannabis sativa
PK04625.1
N
0.791
GSMUA_Achr1G20970_001
Musa acuminata
GSMUA_Achr1G20970_001
N
0.788
GSMUA_Achr2G14600_001
Musa acuminata
GSMUA_Achr2G14600_001
N
0.788
Si002412m.g
Setaria italica
Si002412m.g
N
0.788
TRAES3BF008500030CFD_g
Triticum aestivum
TRAES3BF008500030CFD_g
N
0.788
TRAES3BF008600030CFD_g
Triticum aestivum
TRAES3BF008600030CFD_g
N
0.788
Pavir.J00526
Panicum virgatum
Pavir.J00526
N
0.788
PK25954.1
Cannabis sativa
PK25954.1
N
0.783
GRMZM2G073044
Zea mays
GRMZM2G073044
N
0.778
POPTR_0010s13480
Populus trichocarpa
POPTR_0010s13480
N
0.778
PRUPE_ppa011233mg
Prunus persica
PRUPE_ppa011233mg
N
0.778
Pm029059
Prunus mume
Pm029059
N
0.778
27524.m000293
Ricinus communis
27524.m000293
N
0.778
mgf017960m
Mimulus guttatus
mgf017960m
N
0.778
Gorai.002G217800
Gossypium raimondii
Gorai.002G217800
N
0.778
Pavir.Ea00650
Panicum virgatum
Pavir.Ea00650
N
0.778
SapurV1A.0078s0410
Salix purpurea
SapurV1A.0078s0410
N
0.778
GRMZM2G386674
Zea mays
GRMZM2G386674
N
0.776
LjSGA_023437.1
Lotus japonicus
LjSGA_023437.1
N
0.776
Sb09g025710
Sorghum bicolor
Sb09g025710
N
0.773
evm.TU.supercontig_1.42
Carica papaya
evm.TU.supercontig_1.42
N
0.768
MDP0000233303
Malus domestica
MDP0000233303
N
0.768
SapurV1A.0079s0150
Salix purpurea
SapurV1A.0079s0150
N
0.768
PK04548.1
Cannabis sativa
PK04548.1
N
0.768
Cla020705
Citrullus lanatus
Cla020705
N
0.758
Ciclev10016422m.g
Citrus clementina
Ciclev10016422m.g
N
0.758
Gorai.006G061200
Gossypium raimondii
Gorai.006G061200
N
0.758
OB01G27020
Oryza brachyantha
OB01G27020
N
0.747
POPTR_0012s05340
Populus trichocarpa
POPTR_0012s05340
N
0.747
VIT_01s0011g03530
Vitis vinifera
VIT_01s0011g03530
N
0.747
Cucsa.283560
Cucumis sativus
Cucsa.283560
N
0.747
Eucgr.B03016
Eucalyptus grandis
Eucgr.B03016
N
0.747
orange1.1g045357m.g
Citrus sinensis
orange1.1g045357m.g
N
0.747
AMTR_s00137p00087340
Amborella trichopoda
AMTR_s00137p00087340
N
0.724
GLYMA20G24950
Glycine max
GLYMA20G24950
N
0.717
GSMUA_Achr3G18860_001
Musa acuminata
GSMUA_Achr3G18860_001
N
0.717
SELMODRAFT_37566
Selaginella moellendorffii
SELMODRAFT_37566
N
0.717
SELMODRAFT_37570
Selaginella moellendorffii
SELMODRAFT_37570
N
0.717
VIT_07s0129g00330
Vitis vinifera
VIT_07s0129g00330
N
0.717
Ciclev10026374m.g
Citrus clementina
Ciclev10026374m.g
N
0.717
orange1.1g026365m.g
Citrus sinensis
orange1.1g026365m.g
N
0.717
Bra011772
Brassica rapa
Bra011772
N
0.714
GLYMA17G17540
Glycine max
GLYMA17G17540
N
0.714
Lus10011530.g
Linum usitatissimum
Lus10011530.g
N
0.714
Lus10019292.g
Linum usitatissimum
Lus10019292.g
N
0.714
mgf021653m
Mimulus guttatus
mgf021653m
N
0.708
Bo1g003550
Brassica oleracea
Bo1g003550
N
0.707
GLYMA08G31143
Glycine max
GLYMA08G31143
N
0.707
Traes_4DL_E0847FBC5
Triticum aestivum
Traes_4DL_E0847FBC5
N
0.707
Thhalv10026086m.g
Eutrema salsugineum
Thhalv10026086m.g
N
0.707
LBD39
Arabidopsis lyrata
fgenesh2_kg.7__297__AT4G37540.1
N
0.704
GLYMA05G22120
Glycine max
GLYMA05G22120
N
0.704
GSMUA_Achr3G30130_001
Musa acuminata
GSMUA_Achr3G30130_001
N
0.704
PGSC0003DMG400024936
Solanum tuberosum
PGSC0003DMG400024936
N
0.704
SELMODRAFT_105005
Selaginella moellendorffii
SELMODRAFT_105005
N
0.704
SELMODRAFT_27399
Selaginella moellendorffii
SELMODRAFT_27399
N
0.704
Si031011m.g
Setaria italica
Si031011m.g
N
0.704
Solyc02g092550.2
Solanum lycopersicum
Solyc02g092550.2
N
0.704
TCM_000766
Theobroma cacao
TCM_000766
N
0.704
29661.m000902
Ricinus communis
29661.m000902
N
0.704
cassava7497.valid.m1
Manihot esculenta
cassava7497.valid.m1
N
0.704
Aquca_042_00143
Aquilegia coerulea
Aquca_042_00143
N
0.704
Bostr.7867s1612
Boechera stricta
Bostr.7867s1612
N
0.704
Pavir.Bb01170
Panicum virgatum
Pavir.Bb01170
N
0.704