Eucgr.E01415 (Eucalyptus grandis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Eucgr.E01415 T246839_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.808 0.808
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.808 0.808
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.788 0.788
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.788 0.788
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.747 0.747
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.E01415.1 LOB 31 130

Links

Other LOB family TFs
Other Eucalyptus grandis TFs

273 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.899
mgf020735m Mimulus guttatus mgf020735m I 0.889
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.879
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.879
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.869
Pm017935 Prunus mume Pm017935 I 0.869
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.859
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.859
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.859
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.859
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.848
TCM_005497 Theobroma cacao TCM_005497 I 0.848
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.848
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.848
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.848
MDP0000429067 Malus domestica MDP0000429067 I 0.848
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.838
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.838
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.838
30174.m008897 Ricinus communis 30174.m008897 I 0.838
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.838
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.838
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.838
PK25573.1 Cannabis sativa PK25573.1 I 0.838
LBD31 Arabidopsis thaliana AT4G00210 I 0.828
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.828
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.828
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.828
Ca_19598 Cicer arietinum Ca_19598 I 0.828
Cla007069 Citrullus lanatus Cla007069 I 0.828
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.828
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.828
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.828
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.828
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.828
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.818
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.818
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.818
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.818
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.818
OBART03G10450 Oryza barthii OBART03G10450 I 0.818
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.818
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.818
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.818
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.818
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.818
OS03G0246900 Oryza sativa OS03G0246900 I 0.818
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.818
30174.m008898 Ricinus communis 30174.m008898 I 0.818
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.818
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.818
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.818
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.818
LBD19 Arabidopsis thaliana AT2G45410 D 0.808
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.808
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.808
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.808
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
Cla007068 Citrullus lanatus Cla007068 I 0.808
Pm017936 Prunus mume Pm017936 I 0.808
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.808
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.808
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.808
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.808
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.808
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.808
Bo4g195520 Brassica oleracea Bo4g195520 I 0.798
Bra040311 Brassica rapa Bra040311 I 0.798
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.798
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.798
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.798
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.798
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.798
LBD18 Arabidopsis thaliana AT2G45420 D 0.788
Bo4g024620 Brassica oleracea Bo4g024620 I 0.788
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.788
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.788
OB10G12360 Oryza brachyantha OB10G12360 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.788
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.788
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.788
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.788
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.788
Bra004910 Brassica rapa Bra004910 I 0.778
Bra040312 Brassica rapa Bra040312 I 0.778
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.778
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.778
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.778
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.768
Bo4g024610 Brassica oleracea Bo4g024610 I 0.768
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.768
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.768
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.768
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.768
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.768
OS10G0162600 Oryza sativa OS10G0162600 I 0.768
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.768
Bo9g002160 Brassica oleracea Bo9g002160 I 0.758
Bra004908 Brassica rapa Bra004908 I 0.758
Bra037323 Brassica rapa Bra037323 I 0.758
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.758
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.758
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.758
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.758
LBD30 Arabidopsis thaliana AT4G00220 D 0.747
Bo9g002150 Brassica oleracea Bo9g002150 I 0.747
Bra037322 Brassica rapa Bra037322 I 0.747
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.747
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.747
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.747
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.747
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.747
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.747
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.737
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
Bra008514 Brassica rapa Bra008514 I 0.737
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.737
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.737
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.737
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.737
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
OB03G13890 Oryza brachyantha OB03G13890 I 0.737
OBART03G03830 Oryza barthii OBART03G03830 I 0.737
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.737
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.737
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.737
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.737
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.737
OS03G0149100 Oryza sativa OS03G0149100 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.737
Si040019m.g Setaria italica Si040019m.g I 0.737
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.737
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.737
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.737
Ca_20428 Cicer arietinum Ca_20428 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.737
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.737
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.737
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.737
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.727
F775_22967 Aegilops tauschii F775_22967 I 0.727
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.727
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.727
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.727
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.727
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.727
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
Cla006087 Citrullus lanatus Cla006087 I 0.727
Pm020629 Prunus mume Pm020629 I 0.727
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.727
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.727
mgf006429m Mimulus guttatus mgf006429m I 0.727
mgf020773m Mimulus guttatus mgf020773m I 0.727
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.727
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.727
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.727
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.727
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.727
LBD20 Arabidopsis thaliana AT3G03760 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.717
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.717
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.717
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.717
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.717
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.717
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
OB08G30680 Oryza brachyantha OB08G30680 I 0.717
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.717
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.717
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.717
Ca_07763 Cicer arietinum Ca_07763 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
Pm028642 Prunus mume Pm028642 I 0.717
28428.m000040 Ricinus communis 28428.m000040 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.717
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.717
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.717
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.717
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.717
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.717
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.717
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.707
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.707
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.707
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.707
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.707
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.707
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.707
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.707
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.707
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.707
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.707
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.707
OS08G0563400 Oryza sativa OS08G0563400 I 0.707
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.707
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
Si019578m.g Setaria italica Si019578m.g I 0.707
TCM_005496 Theobroma cacao TCM_005496 I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
Pm020628 Prunus mume Pm020628 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.707
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.707
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.707
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.707
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.707