evm.TU.supercontig_331.6 (Carica papaya)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 evm.TU.supercontig_331.6 T246890_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.915 0.915
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.872 0.872
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.787 0.787
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.787 0.787
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.787 0.787
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_331.6 LOB 13 59

Links

Other LOB family TFs
Other Carica papaya TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZHX2 Sus scrofa ENSSSCG00000021586 N
ENSOARG00000020165 Ovis aries ENSOARG00000020165 N
ZHX2 Oryctolagus cuniculus ENSOCUG00000008550 N
ZHX2 Otolemur garnettii ENSOGAG00000026824 N
ZHX2 Ochotona princeps ENSOPRG00000005053 N
ENSPANG00000002729 Papio anubis ENSPANG00000002729 N
ENSPSIG00000007720 Pelodiscus sinensis ENSPSIG00000007720 N
ZHX2 Pan troglodytes ENSPTRG00000020545 N
ZHX2 Pteropus vampyrus ENSPVAG00000003962 N
Zhx2 Rattus norvegicus ENSRNOG00000005417 N
ZHX2 Sorex araneus ENSSARG00000013090 N
ENSSHAG00000011260 Sarcophilus harrisii ENSSHAG00000011260 N
ENSNLEG00000005201 Nomascus leucogenys ENSNLEG00000005201 N
ENSSTOG00000011248 Ictidomys tridecemlineatus ENSSTOG00000011248 N
ZHX2 Taeniopygia guttata ENSTGUG00000012413 N
ZHX2 Tursiops truncatus ENSTTRG00000016360 N
Alligator_sinensis_CCG017539.1 Alligator sinensis Alligator_sinensis_CCG017539.1 N
Cmyd_10007212 Chelonia mydas Cmyd_10007212 N
ENSP00000314709-D1 Bos grunniens ENSP00000314709-D1 N
ENSP00000314709 Macaca fascicularis ENSP00000314709 N
Myotis_brandtii_ZHX2_10013265 Myotis brandtii Myotis_brandtii_ZHX2_10013265 N
Ogr14963 Ophisaurus gracilis Ogr14963 N
Pvit_18224 Pogona vitticeps Pvit_18224 N
ENSFALG00000014375 Ficedula albicollis ENSFALG00000014375 N
ENSAMEG00000019088 Ailuropoda melanoleuca ENSAMEG00000019088 N
ENSAPLG00000001368 Anas platyrhynchos ENSAPLG00000001368 N
ZHX2 Bos taurus ENSBTAG00000026309 N
ZHX2 Canis familiaris ENSCAFG00000000967 N
ZHX2 Callithrix jacchus ENSCJAG00000022247 N
ENSCSAG00000018613 Chlorocebus sabaeus ENSCSAG00000018613 N
ZHX2 Dasypus novemcinctus ENSDNOG00000018935 N
Zhx2 Dipodomys ordii ENSDORG00000014490 N
ZHX2 Equus caballus ENSECAG00000023125 N
ZHX2 Erinaceus europaeus ENSEEUG00000003152 N
ZHX2 Anolis carolinensis ENSACAG00000009402 N
ZHX2 Felis catus ENSFCAG00000026338 N
ZHX2 Homo sapiens ENSG00000178764 N
ENSGALG00000016390 Gallus gallus ENSGALG00000016390 N
ZHX2 Gorilla gorilla ENSGGOG00000006502 N
ENSLACG00000007239 Latimeria chalumnae ENSLACG00000007239 N
ZHX2 Loxodonta africana ENSLAFG00000009019 N
ZHX2 Meleagris gallopavo ENSMGAG00000015867 N
ZHX2 Myotis lucifugus ENSMLUG00000009074 N
ZHX2 Macaca mulatta ENSMMUG00000005363 N
Zhx2 Mus musculus ENSMUSG00000071757 N