gene21311-v1.0-hybrid (Fragaria vesca)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gene21311-v1.0-hybrid T246923_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.859 0.859
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.859 0.859
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna21311.1-v1.0-hybrid LOB 52 150

Links

Other LOB family TFs
Other Fragaria vesca TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Aa01831 Panicum virgatum Pavir.Aa01831 N
Pavir.J28923 Panicum virgatum Pavir.J28923 N
Pavir.J38077 Panicum virgatum Pavir.J38077 N
Si019235m.g Setaria italica Si019235m.g N
Si019271m.g Setaria italica Si019271m.g N
Si019409m.g Setaria italica Si019409m.g N
Si019546m.g Setaria italica Si019546m.g N
Si019812m.g Setaria italica Si019812m.g N
Si020174m.g Setaria italica Si020174m.g N