CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene26330-v1.0-hybrid
(
Fragaria vesca
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
gene26330-v1.0-hybrid
T246931_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna26330.1-v1.0-hybrid
LOB
7
106
SCGACKFLRRKCTSECVFAPYFCYDQAATHFAAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEALARMRDPIYGCVSQIFALQQQVAYLQEEIETLLQ
Links
Other
LOB
family TFs
Other
Fragaria vesca
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000123797
Malus domestica
MDP0000123797
N
0.929
MDP0000133936
Malus domestica
MDP0000133936
N
0.919
PRUPE_ppa018815mg
Prunus persica
PRUPE_ppa018815mg
N
0.909
Pm018835
Prunus mume
Pm018835
N
0.909
evm.TU.supercontig_1.438
Carica papaya
evm.TU.supercontig_1.438
I
0.899
POPTR_0010s20800
Populus trichocarpa
POPTR_0010s20800
I
0.879
SapurV1A.0281s0190
Salix purpurea
SapurV1A.0281s0190
I
0.879
30143.m001171
Ricinus communis
30143.m001171
N
0.869
Eucgr.G02955
Eucalyptus grandis
Eucgr.G02955
I
0.869
TCM_042730
Theobroma cacao
TCM_042730
I
0.848
Ciclev10033354m.g
Citrus clementina
Ciclev10033354m.g
I
0.838
cassava15468.m1
Manihot esculenta
cassava15468.m1
I
0.830
LBD33
Vitis vinifera
VIT_13s0019g02060
N
0.818
Gorai.011G267700
Gossypium raimondii
Gorai.011G267700
I
0.818
LjSGA_054888.1
Lotus japonicus
LjSGA_054888.1
I
0.818
PK00972.1
Cannabis sativa
PK00972.1
I
0.817
cassava34632.m1
Manihot esculenta
cassava34632.m1
N
0.808
GLYMA02G41710
Glycine max
GLYMA02G41710
N
0.798
GLYMA14G07260
Glycine max
GLYMA14G07260
N
0.788
Ca_16122
Cicer arietinum
Ca_16122
N
0.768
MTR_5g080470
Medicago truncatula
MTR_5g080470
N
0.758
LBD33
Arabidopsis lyrata
Al_scaffold_0006_527
N
0.747
Cla004059
Citrullus lanatus
Cla004059
N
0.747
Cagra.2117s0054
Capsella grandiflora
Cagra.2117s0054
N
0.747
Carubv10002921m.g
Capsella rubella
Carubv10002921m.g
N
0.747
Lus10004707.g
Linum usitatissimum
Lus10004707.g
N
0.747
LBD33
Arabidopsis thaliana
AT5G06080
N
0.737
Cucsa.165150
Cucumis sativus
Cucsa.165150
N
0.737
Bostr.13129s0366
Boechera stricta
Bostr.13129s0366
N
0.737
Bo9g176580
Brassica oleracea
Bo9g176580
N
0.727
Bra009161
Brassica rapa
Bra009161
N
0.727
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.724
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.721
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.717
OB08G30680
Oryza brachyantha
OB08G30680
I
0.717
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.716
PK23380.1
Cannabis sativa
PK23380.1
I
0.716
SapurV1A.1704s0040
Salix purpurea
SapurV1A.1704s0040
I
0.708
LBD29
Arabidopsis thaliana
AT3G58190
I
0.707
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
0.707
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.707
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
0.707
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.707
Bra001087
Brassica rapa
Bra001087
I
0.706
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.700