CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Lus10005313.g
(
Linum usitatissimum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Lus10005313.g
T247014_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.788
0.788
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10005313
LOB
7
105
PCAACKFLRRKCTQECIFAPYFPPDQPQKFASVHKVFGASNVAKLLKELSAVQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQLHHDLELARR
Links
Other
LOB
family TFs
Other
Linum usitatissimum
TFs
224 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_20715
Aegilops tauschii
F775_20715
I
0.737
F775_21760
Aegilops tauschii
F775_21760
I
0.758
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.808
Aquca_007_00083
Aquilegia coerulea
Aquca_007_00083
I
0.848
Aquca_011_00559
Aquilegia coerulea
Aquca_011_00559
I
0.717
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.768
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.707
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.788
ASL1
Arabidopsis lyrata
fgenesh2_kg.8__2729__AT5G66870.1
I
0.859
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.707
LBD6
Arabidopsis thaliana
AT1G65620
D
0.788
LOB
Arabidopsis thaliana
AT5G63090
D
0.707
LBD36
Arabidopsis thaliana
AT5G66870
I
0.869
Bostr.0568s0111
Boechera stricta
Bostr.0568s0111
I
0.879
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.707
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.788
BRADI1G14677
Brachypodium distachyon
BRADI1G14677
N
0.737
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.707
BRADI2G25270
Brachypodium distachyon
BRADI2G25270
I
0.768
BRADI2G57380
Brachypodium distachyon
BRADI2G57380
I
0.737
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.788
Bo2g167820
Brassica oleracea
Bo2g167820
I
0.838
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.707
Bo4g151770
Brassica oleracea
Bo4g151770
I
0.717
Bo7g064360
Brassica oleracea
Bo7g064360
I
0.838
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.717
Bo9g021590
Brassica oleracea
Bo9g021590
N
0.727
Bra012112
Brassica rapa
Bra012112
I
0.838
Bra032153
Brassica rapa
Bra032153
I
0.717
Bra037142
Brassica rapa
Bra037142
N
0.707
Bra038606
Brassica rapa
Bra038606
I
0.707
Bra039733
Brassica rapa
Bra039733
I
0.788
PK18922.1
Cannabis sativa
PK18922.1
I
0.842
PK21617.1
Cannabis sativa
PK21617.1
I
0.739
PK29334.1
Cannabis sativa
PK29334.1
I
0.750
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.788
Cagra.20099s0001
Capsella grandiflora
Cagra.20099s0001
I
0.879
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.707
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.788
Carubv10026811m.g
Capsella rubella
Carubv10026811m.g
I
0.879
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.707
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.717
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.788
evm.TU.supercontig_6.423
Carica papaya
evm.TU.supercontig_6.423
I
0.818
Ca_02124
Cicer arietinum
Ca_02124
I
0.737
Ca_02125
Cicer arietinum
Ca_02125
I
0.737
Ca_07463
Cicer arietinum
Ca_07463
I
0.707
Ca_08824
Cicer arietinum
Ca_08824
I
0.717
Ca_11161
Cicer arietinum
Ca_11161
I
0.778
Ca_18206
Cicer arietinum
Ca_18206
N
0.747
Ca_20200
Cicer arietinum
Ca_20200
I
0.768
Cla005851
Citrullus lanatus
Cla005851
I
0.778
Cla019510
Citrullus lanatus
Cla019510
I
0.717
Cla020438
Citrullus lanatus
Cla020438
I
0.828
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.798
Ciclev10027275m.g
Citrus clementina
Ciclev10027275m.g
I
0.848
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.798
orange1.1g039589m.g
Citrus sinensis
orange1.1g039589m.g
I
0.848
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.778
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.717
Cucsa.250570
Cucumis sativus
Cucsa.250570
I
0.848
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.788
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.717
Thhalv10000525m.g
Eutrema salsugineum
Thhalv10000525m.g
I
0.717
Thhalv10004535m.g
Eutrema salsugineum
Thhalv10004535m.g
I
0.869
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.707
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.788
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.788
gene24088-v1.0-hybrid
Fragaria vesca
gene24088-v1.0-hybrid
I
0.869
gene30401-v1.0-hybrid
Fragaria vesca
gene30401-v1.0-hybrid
I
0.798
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.707
GLYMA01G39060
Glycine max
GLYMA01G39060
I
0.798
GLYMA04G11991
Glycine max
GLYMA04G11991
I
0.808
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.717
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.717
GLYMA05G09950
Glycine max
GLYMA05G09950
I
0.717
GLYMA06G11181
Glycine max
GLYMA06G11181
I
0.818
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.717
GLYMA11G06210
Glycine max
GLYMA11G06210
I
0.798
GLYMA11G17890
Glycine max
GLYMA11G17890
I
0.737
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.768
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.768
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.717
Gorai.007G210500
Gossypium raimondii
Gorai.007G210500
I
0.859
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.778
Gorai.008G073400
Gossypium raimondii
Gorai.008G073400
I
0.808
Gorai.011G104600
Gossypium raimondii
Gorai.011G104600
I
0.848
MLOC_61156
Hordeum vulgare
MLOC_61156
I
0.758
MLOC_72525
Hordeum vulgare
MLOC_72525
I
0.737
LPERR01G34430
Leersia perrieri
LPERR01G34430
I
0.737
LPERR03G21590
Leersia perrieri
LPERR03G21590
I
0.768
Lus10006679.g
Linum usitatissimum
Lus10006679.g
N
0.727
Lus10009337.g
Linum usitatissimum
Lus10009337.g
I
0.758
Lus10013610.g
Linum usitatissimum
Lus10013610.g
I
0.768
Lus10016769.g
Linum usitatissimum
Lus10016769.g
I
0.838
Lus10019633.g
Linum usitatissimum
Lus10019633.g
I
0.758
Lus10022463.g
Linum usitatissimum
Lus10022463.g
I
0.838
Lus10025840.g
Linum usitatissimum
Lus10025840.g
N
0.727
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.707
Lus10038261.g
Linum usitatissimum
Lus10038261.g
N
0.737
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.707
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.717
chr2.LjT16G06.10.nd
Lotus japonicus
chr2.LjT16G06.10.nd
I
0.788
MDP0000130659
Malus domestica
MDP0000130659
I
0.717
MDP0000197526
Malus domestica
MDP0000197526
I
0.758
MDP0000254288
Malus domestica
MDP0000254288
I
0.717
MDP0000273432
Malus domestica
MDP0000273432
I
0.788
MDP0000310871
Malus domestica
MDP0000310871
I
0.808
MDP0000562305
Malus domestica
MDP0000562305
I
0.808
MDP0000643326
Malus domestica
MDP0000643326
I
0.778
MDP0000777060
Malus domestica
MDP0000777060
I
0.798
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.788
cassava16840.m1
Manihot esculenta
cassava16840.m1
I
0.838
cassava16846.m1
Manihot esculenta
cassava16846.m1
I
0.848
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.717
cassava32690.m1
Manihot esculenta
cassava32690.m1
I
0.848
cassava32691.m1
Manihot esculenta
cassava32691.m1
I
0.879
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.717
MTR_3g073690
Medicago truncatula
MTR_3g073690
I
0.758
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.707
MTR_3g452660
Medicago truncatula
MTR_3g452660
N
0.717
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.717
MTR_5g017950
Medicago truncatula
MTR_5g017950
I
0.778
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.768
mgf004296m
Mimulus guttatus
mgf004296m
I
0.798
mgf014755m
Mimulus guttatus
mgf014755m
I
0.788
GSMUA_Achr6G04670_001
Musa acuminata
GSMUA_Achr6G04670_001
I
0.768
OBART01G39990
Oryza barthii
OBART01G39990
I
0.737
OB01G48740
Oryza brachyantha
OB01G48740
I
0.737
OB03G34080
Oryza brachyantha
OB03G34080
I
0.747
OB05G24560
Oryza brachyantha
OB05G24560
I
0.768
ORGLA01G0339000
Oryza glaberrima
ORGLA01G0339000
I
0.737
ORGLA03G0240600
Oryza glaberrima
ORGLA03G0240600
I
0.758
ORGLA05G0143500
Oryza glaberrima
ORGLA05G0143500
I
0.758
OGLUM01G44190
Oryza glumaepatula
OGLUM01G44190
I
0.737
OGLUM03G26820
Oryza glumaepatula
OGLUM03G26820
I
0.758
OGLUM05G17630
Oryza glumaepatula
OGLUM05G17630
I
0.758
LBD6
Oryza indica
BGIOSGA004955
I
0.737
BGIOSGA013119
Oryza indica
BGIOSGA013119
I
0.758
BGIOSGA018046
Oryza indica
BGIOSGA018046
I
0.758
OLONG_016086
Oryza longistaminata
OLONG_016086
I
0.737
OMERI01G36900
Oryza meridionalis
OMERI01G36900
I
0.737
ONIVA01G44840
Oryza nivara
ONIVA01G44840
I
0.737
ONIVA11G15310
Oryza nivara
ONIVA11G15310
I
0.758
OPUNC01G38680
Oryza punctata
OPUNC01G38680
I
0.737
ORUFI01G43320
Oryza rufipogon
ORUFI01G43320
I
0.737
ORUFI03G26840
Oryza rufipogon
ORUFI03G26840
I
0.758
ORUFI05G17830
Oryza rufipogon
ORUFI05G17830
I
0.758
LBD6
Oryza sativa
OS01G0889400
I
0.737
OS03G0612400
Oryza sativa
OS03G0612400
I
0.758
OS05G0417000
Oryza sativa
OS05G0417000
I
0.758
Pavir.Ea03589
Panicum virgatum
Pavir.Ea03589
I
0.758
Pavir.Ib03943
Panicum virgatum
Pavir.Ib03943
I
0.768
Pavir.J03238
Panicum virgatum
Pavir.J03238
I
0.727
Pavir.J03307
Panicum virgatum
Pavir.J03307
I
0.737
Pavir.J09541
Panicum virgatum
Pavir.J09541
I
0.758
Pavir.J16692
Panicum virgatum
Pavir.J16692
I
0.747
Pavir.J22284
Panicum virgatum
Pavir.J22284
I
0.758
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.717
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.737
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.727
POPTR_0005s14150
Populus trichocarpa
POPTR_0005s14150
I
0.879
POPTR_0007s11460
Populus trichocarpa
POPTR_0007s11460
I
0.899
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.778
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.778
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.717
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.717
Pm010483
Prunus mume
Pm010483
I
0.778
Pm024312
Prunus mume
Pm024312
I
0.717
Pm026450
Prunus mume
Pm026450
I
0.848
PRUPE_ppa015145mg
Prunus persica
PRUPE_ppa015145mg
I
0.788
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.717
PRUPE_ppa026393mg
Prunus persica
PRUPE_ppa026393mg
I
0.848
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.788
29676.m001633
Ricinus communis
29676.m001633
I
0.818
29929.m004500
Ricinus communis
29929.m004500
I
0.788
30147.m013890
Ricinus communis
30147.m013890
I
0.717
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.727
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.778
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.778
SapurV1A.0428s0090
Salix purpurea
SapurV1A.0428s0090
I
0.899
SapurV1A.0641s0140
Salix purpurea
SapurV1A.0641s0140
I
0.899
SapurV1A.0811s0010
Salix purpurea
SapurV1A.0811s0010
I
0.798
SapurV1A.0811s0020
Salix purpurea
SapurV1A.0811s0020
I
0.899
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.707
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.717
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.717
Si002599m.g
Setaria italica
Si002599m.g
I
0.758
Si024114m.g
Setaria italica
Si024114m.g
I
0.727
Si036905m.g
Setaria italica
Si036905m.g
I
0.747
Solyc02g065150.1
Solanum lycopersicum
Solyc02g065150.1
I
0.838
Solyc02g090410.2
Solanum lycopersicum
Solyc02g090410.2
I
0.808
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.778
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.788
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.778
PGSC0003DMG400010023
Solanum tuberosum
PGSC0003DMG400010023
I
0.808
PGSC0003DMG401000764
Solanum tuberosum
PGSC0003DMG401000764
I
0.818
PGSC0003DMG402000764
Solanum tuberosum
PGSC0003DMG402000764
I
0.838
Sb01g014650
Sorghum bicolor
Sb01g014650
I
0.737
Sb03g042310
Sorghum bicolor
Sb03g042310
I
0.758
Sb09g020440
Sorghum bicolor
Sb09g020440
I
0.727
TCM_000560
Theobroma cacao
TCM_000560
I
0.869
TCM_012190
Theobroma cacao
TCM_012190
I
0.717
TCM_024217
Theobroma cacao
TCM_024217
I
0.788
Traes_1AL_4B89B33E3
Triticum aestivum
Traes_1AL_4B89B33E3
I
0.758
Traes_1DL_1290B6A52
Triticum aestivum
Traes_1DL_1290B6A52
I
0.769
TRAES3BF084400010CFD_g
Triticum aestivum
TRAES3BF084400010CFD_g
I
0.737
Traes_4AL_C060BF9F6
Triticum aestivum
Traes_4AL_C060BF9F6
I
0.737
Traes_4BS_C1F4F41E9
Triticum aestivum
Traes_4BS_C1F4F41E9
I
0.747
Traes_4DS_72ABC3EE5
Triticum aestivum
Traes_4DS_72ABC3EE5
I
0.747
TRIUR3_06488
Triticum urartu
TRIUR3_06488
I
0.717
TRIUR3_23928
Triticum urartu
TRIUR3_23928
I
0.737
TRIUR3_32863
Triticum urartu
TRIUR3_32863
I
0.727
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.833
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.788
VIT_00s1247g00010
Vitis vinifera
VIT_00s1247g00010
I
0.828
VIT_07s0197g00020
Vitis vinifera
VIT_07s0197g00020
I
0.828
VIT_07s0197g00030
Vitis vinifera
VIT_07s0197g00030
I
0.778
VIT_07s0197g00040
Vitis vinifera
VIT_07s0197g00040
I
0.778
VIT_16s0022g02050
Vitis vinifera
VIT_16s0022g02050
I
0.788
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.717
GRMZM2G118250
Zea mays
GRMZM2G118250
I
0.758
GRMZM2G133806
Zea mays
GRMZM2G133806
I
0.717
GRMZM2G362627
Zea mays
GRMZM2G362627
I
0.737