CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ea03589
(
Panicum virgatum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Pavir.Ea03589
T247196_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.879
0.879
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ea03589.1.p
LOB
34
132
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY
Pavir.Ea03589.2.p
LOB
34
132
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY
Pavir.Ea03589.3.p
LOB
34
132
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY
Pavir.Ea03589.4.p
LOB
34
132
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY
Pavir.Ea03589.5.p
LOB
34
132
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY
Links
Other
LOB
family TFs
Other
Panicum virgatum
TFs
255 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD6
Arabidopsis thaliana
AT1G65620
D
0.879
LOB
Arabidopsis thaliana
AT5G63090
D
0.717
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.727
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.818
LBD10
Arabidopsis thaliana
AT2G23660
I
0.727
LBD36
Arabidopsis thaliana
AT5G66870
I
0.768
BGIOSGA002306
Oryza indica
BGIOSGA002306
I
0.787
LBD6
Oryza indica
BGIOSGA004955
I
0.949
BGIOSGA013119
Oryza indica
BGIOSGA013119
I
0.707
BGIOSGA018046
Oryza indica
BGIOSGA018046
I
0.939
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.879
Bo2g167820
Brassica oleracea
Bo2g167820
I
0.758
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.717
Bo4g151770
Brassica oleracea
Bo4g151770
I
0.707
Bo7g064360
Brassica oleracea
Bo7g064360
I
0.788
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.727
Bra012112
Brassica rapa
Bra012112
I
0.788
Bra032153
Brassica rapa
Bra032153
I
0.707
Bra038606
Brassica rapa
Bra038606
I
0.717
Bra039733
Brassica rapa
Bra039733
I
0.879
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.737
BRADI2G25270
Brachypodium distachyon
BRADI2G25270
I
0.929
BRADI2G57380
Brachypodium distachyon
BRADI2G57380
I
0.949
F775_20715
Aegilops tauschii
F775_20715
I
0.970
F775_21760
Aegilops tauschii
F775_21760
I
0.939
F775_25656
Aegilops tauschii
F775_25656
I
0.727
F775_33210
Aegilops tauschii
F775_33210
I
0.781
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.879
ASL1
Arabidopsis lyrata
fgenesh2_kg.8__2729__AT5G66870.1
I
0.788
GLYMA01G39060
Glycine max
GLYMA01G39060
I
0.758
GLYMA04G11991
Glycine max
GLYMA04G11991
I
0.758
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.727
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.727
GLYMA05G09950
Glycine max
GLYMA05G09950
I
0.717
GLYMA06G11181
Glycine max
GLYMA06G11181
I
0.758
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.727
GLYMA11G06210
Glycine max
GLYMA11G06210
I
0.758
GLYMA11G17890
Glycine max
GLYMA11G17890
I
0.808
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.848
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.848
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.727
GRMZM2G096064
Zea mays
GRMZM2G096064
I
0.808
GRMZM2G118250
Zea mays
GRMZM2G118250
I
1.000
GRMZM2G133806
Zea mays
GRMZM2G133806
I
0.939
GSMUA_Achr11G26500_001
Musa acuminata
GSMUA_Achr11G26500_001
I
0.848
GSMUA_Achr2G13400_001
Musa acuminata
GSMUA_Achr2G13400_001
I
0.739
GSMUA_Achr5G25770_001
Musa acuminata
GSMUA_Achr5G25770_001
I
0.848
GSMUA_Achr6G04670_001
Musa acuminata
GSMUA_Achr6G04670_001
I
0.768
GSMUA_Achr7G23710_001
Musa acuminata
GSMUA_Achr7G23710_001
I
0.867
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.727
LPERR01G34430
Leersia perrieri
LPERR01G34430
I
0.949
LPERR03G21590
Leersia perrieri
LPERR03G21590
I
0.707
LPERR05G13240
Leersia perrieri
LPERR05G13240
I
0.825
MLOC_61156
Hordeum vulgare
MLOC_61156
I
0.949
MLOC_72525
Hordeum vulgare
MLOC_72525
I
0.970
MTR_3g073690
Medicago truncatula
MTR_3g073690
I
0.707
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.717
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.727
MTR_5g017950
Medicago truncatula
MTR_5g017950
I
0.747
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.848
OB01G14220
Oryza brachyantha
OB01G14220
I
0.727
OB01G48740
Oryza brachyantha
OB01G48740
I
0.960
OB05G24560
Oryza brachyantha
OB05G24560
I
0.939
OBART01G04470
Oryza barthii
OBART01G04470
I
0.727
OBART01G39990
Oryza barthii
OBART01G39990
I
0.949
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.727
OGLUM01G44190
Oryza glumaepatula
OGLUM01G44190
I
0.949
OGLUM03G26820
Oryza glumaepatula
OGLUM03G26820
I
0.707
OGLUM05G17630
Oryza glumaepatula
OGLUM05G17630
I
0.939
OLONG_016086
Oryza longistaminata
OLONG_016086
I
0.949
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.727
OMERI01G36900
Oryza meridionalis
OMERI01G36900
I
0.949
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.727
ONIVA01G44840
Oryza nivara
ONIVA01G44840
I
0.949
ONIVA11G15310
Oryza nivara
ONIVA11G15310
I
0.707
OPUNC01G38680
Oryza punctata
OPUNC01G38680
I
0.949
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.727
ORGLA01G0339000
Oryza glaberrima
ORGLA01G0339000
I
0.949
ORGLA03G0240600
Oryza glaberrima
ORGLA03G0240600
I
0.707
ORGLA05G0143500
Oryza glaberrima
ORGLA05G0143500
I
0.939
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.727
ORUFI01G43320
Oryza rufipogon
ORUFI01G43320
I
0.949
ORUFI03G26840
Oryza rufipogon
ORUFI03G26840
I
0.707
ORUFI05G17830
Oryza rufipogon
ORUFI05G17830
I
0.939
OS01G0169400
Oryza sativa
OS01G0169400
I
0.727
LBD6
Oryza sativa
OS01G0889400
I
0.949
OS03G0612400
Oryza sativa
OS03G0612400
I
0.707
OS05G0417000
Oryza sativa
OS05G0417000
I
0.939
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.859
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.707
PGSC0003DMG400010023
Solanum tuberosum
PGSC0003DMG400010023
I
0.768
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.717
PGSC0003DMG401000764
Solanum tuberosum
PGSC0003DMG401000764
I
0.758
PGSC0003DMG402000764
Solanum tuberosum
PGSC0003DMG402000764
I
0.778
POPTR_0005s14150
Populus trichocarpa
POPTR_0005s14150
I
0.778
POPTR_0007s11460
Populus trichocarpa
POPTR_0007s11460
I
0.798
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.879
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.879
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.727
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.727
PRUPE_ppa015145mg
Prunus persica
PRUPE_ppa015145mg
I
0.747
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.727
PRUPE_ppa026393mg
Prunus persica
PRUPE_ppa026393mg
I
0.768
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.879
Sb01g014650
Sorghum bicolor
Sb01g014650
I
0.717
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.727
Sb03g042310
Sorghum bicolor
Sb03g042310
I
1.000
Sb09g020440
Sorghum bicolor
Sb09g020440
I
0.929
LBD10
Arabidopsis lyrata
scaffold_400352.1
I
0.727
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.717
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.737
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.737
Si002599m.g
Setaria italica
Si002599m.g
I
1.000
Si002632m.g
Setaria italica
Si002632m.g
I
0.727
Si024114m.g
Setaria italica
Si024114m.g
I
0.929
Si036905m.g
Setaria italica
Si036905m.g
I
0.727
Solyc02g065150.1
Solanum lycopersicum
Solyc02g065150.1
I
0.778
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.707
Solyc02g090410.2
Solanum lycopersicum
Solyc02g090410.2
I
0.758
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.859
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.727
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.869
TCM_000560
Theobroma cacao
TCM_000560
I
0.798
TCM_012190
Theobroma cacao
TCM_012190
I
0.727
TCM_024217
Theobroma cacao
TCM_024217
I
0.879
Traes_1AL_4B89B33E3
Triticum aestivum
Traes_1AL_4B89B33E3
I
0.939
Traes_1DL_1290B6A52
Triticum aestivum
Traes_1DL_1290B6A52
I
0.969
Traes_1DL_B8551270A
Triticum aestivum
Traes_1DL_B8551270A
I
0.852
TRAES3BF084400010CFD_g
Triticum aestivum
TRAES3BF084400010CFD_g
I
0.970
TRIUR3_23928
Triticum urartu
TRIUR3_23928
I
0.919
TRIUR3_32863
Triticum urartu
TRIUR3_32863
I
0.960
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.889
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.879
VIT_00s1247g00010
Vitis vinifera
VIT_00s1247g00010
I
0.758
VIT_07s0197g00020
Vitis vinifera
VIT_07s0197g00020
I
0.758
VIT_07s0197g00040
Vitis vinifera
VIT_07s0197g00040
I
0.737
VIT_16s0022g02050
Vitis vinifera
VIT_16s0022g02050
I
0.707
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.727
Ca_02124
Cicer arietinum
Ca_02124
I
0.758
Ca_02125
Cicer arietinum
Ca_02125
I
0.747
Ca_07463
Cicer arietinum
Ca_07463
I
0.717
Ca_08824
Cicer arietinum
Ca_08824
I
0.727
Ca_11161
Cicer arietinum
Ca_11161
I
0.747
Ca_20200
Cicer arietinum
Ca_20200
I
0.848
Cla005851
Citrullus lanatus
Cla005851
I
0.859
Cla017388
Citrullus lanatus
Cla017388
I
0.717
Cla019510
Citrullus lanatus
Cla019510
I
0.727
Cla020438
Citrullus lanatus
Cla020438
I
0.758
Pm010483
Prunus mume
Pm010483
I
0.747
Pm024312
Prunus mume
Pm024312
I
0.727
Pm026450
Prunus mume
Pm026450
I
0.768
29676.m001633
Ricinus communis
29676.m001633
I
0.768
29929.m004500
Ricinus communis
29929.m004500
I
0.879
30147.m013890
Ricinus communis
30147.m013890
I
0.727
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.879
cassava16840.m1
Manihot esculenta
cassava16840.m1
I
0.778
cassava16846.m1
Manihot esculenta
cassava16846.m1
I
0.788
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.727
cassava32690.m1
Manihot esculenta
cassava32690.m1
I
0.778
cassava32691.m1
Manihot esculenta
cassava32691.m1
I
0.798
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.727
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.707
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.859
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.727
Cucsa.250570
Cucumis sativus
Cucsa.250570
I
0.778
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.717
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.727
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.747
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.737
gw1.7.209.1
Physcomitrella patens
gw1.7.209.1
I
0.701
mgf003146m
Mimulus guttatus
mgf003146m
I
0.707
mgf004296m
Mimulus guttatus
mgf004296m
I
0.758
mgf014755m
Mimulus guttatus
mgf014755m
I
0.869
Aquca_007_00083
Aquilegia coerulea
Aquca_007_00083
I
0.778
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.848
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.717
Bostr.0568s0111
Boechera stricta
Bostr.0568s0111
I
0.788
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.717
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.879
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.879
Cagra.20099s0001
Capsella grandiflora
Cagra.20099s0001
I
0.788
Cagra.2475s0001
Capsella grandiflora
Cagra.2475s0001
I
0.707
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.717
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.879
Carubv10025704m.g
Capsella rubella
Carubv10025704m.g
I
0.707
Carubv10026811m.g
Capsella rubella
Carubv10026811m.g
I
0.788
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.717
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.717
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.848
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.717
Ciclev10027275m.g
Citrus clementina
Ciclev10027275m.g
I
0.778
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.879
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.707
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.727
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.727
evm.TU.supercontig_331.6
Carica papaya
evm.TU.supercontig_331.6
I
0.723
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.879
evm.TU.supercontig_6.423
Carica papaya
evm.TU.supercontig_6.423
I
0.747
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.879
gene24088-v1.0-hybrid
Fragaria vesca
gene24088-v1.0-hybrid
I
0.758
gene30401-v1.0-hybrid
Fragaria vesca
gene30401-v1.0-hybrid
I
0.737
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.717
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.707
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.717
Gorai.007G210500
Gossypium raimondii
Gorai.007G210500
I
0.798
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.889
Gorai.008G073400
Gossypium raimondii
Gorai.008G073400
I
0.758
Gorai.011G104600
Gossypium raimondii
Gorai.011G104600
I
0.798
Lus10005313.g
Linum usitatissimum
Lus10005313.g
I
0.758
Lus10013610.g
Linum usitatissimum
Lus10013610.g
I
0.859
Lus10016769.g
Linum usitatissimum
Lus10016769.g
I
0.778
Lus10022463.g
Linum usitatissimum
Lus10022463.g
I
0.778
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.717
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.717
MDP0000130659
Malus domestica
MDP0000130659
I
0.727
MDP0000133546
Malus domestica
MDP0000133546
I
0.737
MDP0000197526
Malus domestica
MDP0000197526
I
0.717
MDP0000254288
Malus domestica
MDP0000254288
I
0.727
MDP0000273432
Malus domestica
MDP0000273432
I
0.879
MDP0000310871
Malus domestica
MDP0000310871
I
0.747
MDP0000562305
Malus domestica
MDP0000562305
I
0.758
MDP0000643326
Malus domestica
MDP0000643326
I
0.869
MDP0000777060
Malus domestica
MDP0000777060
I
0.737
MDP0000848210
Malus domestica
MDP0000848210
I
0.707
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.848
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.717
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.717
orange1.1g039589m.g
Citrus sinensis
orange1.1g039589m.g
I
0.778
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.727
Pavir.Ib03943
Panicum virgatum
Pavir.Ib03943
I
0.747
Pavir.J03238
Panicum virgatum
Pavir.J03238
I
0.929
Pavir.J03307
Panicum virgatum
Pavir.J03307
I
0.939
Pavir.J09541
Panicum virgatum
Pavir.J09541
I
0.737
Pavir.J16692
Panicum virgatum
Pavir.J16692
I
0.980
Pavir.J22284
Panicum virgatum
Pavir.J22284
I
0.990
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.727
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.727
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.879
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.879
SapurV1A.0428s0090
Salix purpurea
SapurV1A.0428s0090
I
0.788
SapurV1A.0641s0140
Salix purpurea
SapurV1A.0641s0140
I
0.798
SapurV1A.0811s0020
Salix purpurea
SapurV1A.0811s0020
I
0.798
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.717
Thhalv10000525m.g
Eutrema salsugineum
Thhalv10000525m.g
I
0.717
Thhalv10004535m.g
Eutrema salsugineum
Thhalv10004535m.g
I
0.768
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.717
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.879
PK13228.1
Cannabis sativa
PK13228.1
I
0.781
PK18922.1
Cannabis sativa
PK18922.1
I
0.877
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.727
chr2.LjT16G06.10.nd
Lotus japonicus
chr2.LjT16G06.10.nd
I
0.758
GSMUA_Achr3G21730_001
Musa acuminata
GSMUA_Achr3G21730_001
N
0.709
ONIVA05G17300
Oryza nivara
ONIVA05G17300
N
0.732
Bostr.27895s0126
Boechera stricta
Bostr.27895s0126
N
0.707