CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib00282
(
Panicum virgatum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Pavir.Ib00282
T247212_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.717
0.717
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.717
0.717
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib00282.1.p
LOB
14
113
PCGACKFLRRKCPAECVFAPHFCAEDGAAQFAAIHKVFGASNAAKLLQQVAPADRSEAAATVTYEAQARLRDPIYGCVAHIFALQQQVASLQMQVLQAKA
Links
Other
LOB
family TFs
Other
Panicum virgatum
TFs
139 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G092483
Zea mays
GRMZM2G092483
I
0.990
Si037727m.g
Setaria italica
Si037727m.g
I
0.990
Sb01g047000
Sorghum bicolor
Sb01g047000
I
0.980
Pavir.J24246
Panicum virgatum
Pavir.J24246
I
0.980
OB03G13880
Oryza brachyantha
OB03G13880
I
0.909
BGIOSGA011866
Oryza indica
BGIOSGA011866
I
0.899
OPUNC03G03510
Oryza punctata
OPUNC03G03510
I
0.899
ORGLA03G0035800
Oryza glaberrima
ORGLA03G0035800
I
0.899
OS03G0149000
Oryza sativa
OS03G0149000
I
0.899
LPERR03G03460
Leersia perrieri
LPERR03G03460
I
0.879
MLOC_10783
Hordeum vulgare
MLOC_10783
N
0.879
Traes_4AL_3BA1D51E2
Triticum aestivum
Traes_4AL_3BA1D51E2
N
0.879
Traes_4DL_05F87867C
Triticum aestivum
Traes_4DL_05F87867C
N
0.869
Traes_4BL_F71DE14F7
Triticum aestivum
Traes_4BL_F71DE14F7
N
0.859
Traes_4BS_B43A99154
Triticum aestivum
Traes_4BS_B43A99154
N
0.859
BRADI1G75120
Brachypodium distachyon
BRADI1G75120
N
0.848
OLONG_020840
Oryza longistaminata
OLONG_020840
N
0.848
OMERI07G01670
Oryza meridionalis
OMERI07G01670
N
0.848
OBART03G03820
Oryza barthii
OBART03G03820
I
0.828
OGLUM03G03700
Oryza glumaepatula
OGLUM03G03700
I
0.828
ONIVA03G03570
Oryza nivara
ONIVA03G03570
I
0.828
ORUFI03G03540
Oryza rufipogon
ORUFI03G03540
I
0.828
GRMZM2G075499
Zea mays
GRMZM2G075499
I
0.758
GSMUA_Achr1G01360_001
Musa acuminata
GSMUA_Achr1G01360_001
I
0.758
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.758
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.758
OB02G44330
Oryza brachyantha
OB02G44330
I
0.758
Sb04g037550
Sorghum bicolor
Sb04g037550
I
0.758
Si019578m.g
Setaria italica
Si019578m.g
I
0.758
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.758
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.758
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.758
Pavir.Aa00097
Panicum virgatum
Pavir.Aa00097
I
0.758
Pavir.J39638
Panicum virgatum
Pavir.J39638
I
0.758
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.747
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.747
BRADI3G55680
Brachypodium distachyon
BRADI3G55680
I
0.747
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.747
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.747
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.747
OB03G13890
Oryza brachyantha
OB03G13890
I
0.747
OBART03G03830
Oryza barthii
OBART03G03830
I
0.747
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.747
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.747
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.747
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.747
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.747
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.747
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.747
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.747
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.747
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.747
OS02G0820500
Oryza sativa
OS02G0820500
I
0.747
OS03G0149100
Oryza sativa
OS03G0149100
I
0.747
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.747
Si040019m.g
Setaria italica
Si040019m.g
I
0.747
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
0.747
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.747
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.747
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
0.737
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.737
GSMUA_Achr11G02110_001
Musa acuminata
GSMUA_Achr11G02110_001
I
0.737
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
0.737
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.737
OB08G30680
Oryza brachyantha
OB08G30680
I
0.737
OBART08G23860
Oryza barthii
OBART08G23860
I
0.737
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
0.737
OLONG_010223
Oryza longistaminata
OLONG_010223
I
0.737
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
0.737
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
0.737
OPUNC02G34750
Oryza punctata
OPUNC02G34750
I
0.737
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
0.737
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
0.737
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
0.737
OS08G0563400
Oryza sativa
OS08G0563400
I
0.737
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.737
Traes_4BS_5D9291539
Triticum aestivum
Traes_4BS_5D9291539
I
0.737
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.737
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.737
F775_02052
Aegilops tauschii
F775_02052
I
0.727
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
0.727
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.727
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.727
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.727
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.727
Si015156m.g
Setaria italica
Si015156m.g
I
0.727
Cla006088
Citrullus lanatus
Cla006088
I
0.727
AC149818.2_FG009
Zea mays
AC149818.2_FG009
I
0.717
LBD16
Arabidopsis thaliana
AT2G42430
D
0.717
Bo4g016000
Brassica oleracea
Bo4g016000
I
0.717
Bo4g191530
Brassica oleracea
Bo4g191530
I
0.717
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.717
Bra004693
Brassica rapa
Bra004693
I
0.717
F775_22967
Aegilops tauschii
F775_22967
I
0.717
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
0.717
Sb07g023810
Sorghum bicolor
Sb07g023810
I
0.717
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
0.717
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.717
TRIUR3_07751
Triticum urartu
TRIUR3_07751
I
0.717
cassava15612.m1
Manihot esculenta
cassava15612.m1
I
0.717
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.717
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
0.717
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.717
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.717
Ciclev10024416m.g
Citrus clementina
Ciclev10024416m.g
I
0.717
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
0.717
Lus10024877.g
Linum usitatissimum
Lus10024877.g
I
0.717
orange1.1g040761m.g
Citrus sinensis
orange1.1g040761m.g
I
0.717
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
0.717
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
0.717
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
0.717
Bra016876
Brassica rapa
Bra016876
N
0.707
Bra016877
Brassica rapa
Bra016877
I
0.707
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.707
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.707
GSMUA_Achr1G06580_001
Musa acuminata
GSMUA_Achr1G06580_001
I
0.707
GSMUA_Achr3G27340_001
Musa acuminata
GSMUA_Achr3G27340_001
I
0.707
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
0.707
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.707
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.707
POPTR_0005s24320
Populus trichocarpa
POPTR_0005s24320
I
0.707
Traes_6BS_179B5B6E1
Triticum aestivum
Traes_6BS_179B5B6E1
I
0.707
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
0.707
Ca_12214
Cicer arietinum
Ca_12214
I
0.707
Pm020629
Prunus mume
Pm020629
I
0.707
29883.m002035
Ricinus communis
29883.m002035
I
0.707
cassava40664.m1
Manihot esculenta
cassava40664.m1
I
0.707
Aquca_034_00400
Aquilegia coerulea
Aquca_034_00400
I
0.707
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
0.707
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
0.707
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
0.707
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
0.707
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.707
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
0.707
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.707
Lus10000707.g
Linum usitatissimum
Lus10000707.g
I
0.707
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.707
SapurV1A.0378s0180
Salix purpurea
SapurV1A.0378s0180
I
0.707
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
0.707