Thhalv10006423m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10006423m.g T247336_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.768 0.768
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.768 0.768
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006423m LOB 11 110

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10018619m.g Capsella rubella Carubv10018619m.g I 0.909
Cagra.0686s0035 Capsella grandiflora Cagra.0686s0035 I 0.899
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.798
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.778
Cla006088 Citrullus lanatus Cla006088 I 0.778
Pm020629 Prunus mume Pm020629 I 0.778
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.778
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.778
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.778
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.778
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.778
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.778
LBD16 Arabidopsis thaliana AT2G42430 D 0.768
Bo4g016000 Brassica oleracea Bo4g016000 I 0.768
Bo4g191530 Brassica oleracea Bo4g191530 I 0.768
Bra004693 Brassica rapa Bra004693 I 0.768
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.768
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.768
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.768
29883.m002035 Ricinus communis 29883.m002035 I 0.768
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.768
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.768
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.768
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.768
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.768
MDP0000131964 Malus domestica MDP0000131964 I 0.768
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.768
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.768
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.768
Bo3g036030 Brassica oleracea Bo3g036030 I 0.758
Bra000257 Brassica rapa Bra000257 I 0.758
Bra016877 Brassica rapa Bra016877 I 0.758
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.758
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.758
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.758
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.758
TCM_004106 Theobroma cacao TCM_004106 I 0.758
Ca_12213 Cicer arietinum Ca_12213 I 0.758
MDP0000145761 Malus domestica MDP0000145761 I 0.758
mgf026090m Mimulus guttatus mgf026090m I 0.753
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.747
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.747
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.747
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.747
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.747
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.747
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.747
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.737
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.737
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.737
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.737
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.737
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.727
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.727
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.727
OB02G44330 Oryza brachyantha OB02G44330 I 0.727
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.727
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.727
Bo3g036000 Brassica oleracea Bo3g036000 I 0.720
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.717
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.717
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.717
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.717
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.717
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.717
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.717
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.717
OS02G0820500 Oryza sativa OS02G0820500 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.707
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.707
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.707
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.707