CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PK04625.1
(
Cannabis sativa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
PK04625.1
T247378_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK04625.1
LOB
3
50
SCNGCRVLRKGCSDDCAIRPCLQWIKSPDSQAQATLFLAKFYGRTGLL
Links
Other
LOB
family TFs
Other
Cannabis sativa
TFs
211 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava38982.m1
Manihot esculenta
cassava38982.m1
N
0.907
cassava43296.valid.m1
Manihot esculenta
cassava43296.valid.m1
N
0.907
MTR_1g110840
Medicago truncatula
MTR_1g110840
N
0.884
MTR_6g453130
Medicago truncatula
MTR_6g453130
N
0.884
POPTR_0008s11950
Populus trichocarpa
POPTR_0008s11950
N
0.884
TCM_009888
Theobroma cacao
TCM_009888
N
0.884
27524.m000293
Ricinus communis
27524.m000293
N
0.884
mgf010898m
Mimulus guttatus
mgf010898m
N
0.884
Gorai.002G217800
Gossypium raimondii
Gorai.002G217800
N
0.884
LBD42
Arabidopsis thaliana
AT1G68510
N
0.860
BGIOSGA002703
Oryza indica
BGIOSGA002703
N
0.860
Bo6g106960
Brassica oleracea
Bo6g106960
N
0.860
Bra004315
Brassica rapa
Bra004315
N
0.860
LBD42
Arabidopsis lyrata
fgenesh2_kg.2__1100__AT1G68510.1
N
0.860
GSMUA_Achr2G22720_001
Musa acuminata
GSMUA_Achr2G22720_001
N
0.860
GSMUA_Achr4G03700_001
Musa acuminata
GSMUA_Achr4G03700_001
N
0.860
GSMUA_AchrUn_randomG00460_001
Musa acuminata
GSMUA_AchrUn_randomG00460_001
N
0.860
LPERR01G01830
Leersia perrieri
LPERR01G01830
N
0.860
MTR_6g018270
Medicago truncatula
MTR_6g018270
N
0.860
OB01G11830
Oryza brachyantha
OB01G11830
N
0.860
OBART01G01940
Oryza barthii
OBART01G01940
N
0.860
OGLUM01G02100
Oryza glumaepatula
OGLUM01G02100
N
0.860
ONIVA01G02110
Oryza nivara
ONIVA01G02110
N
0.860
OPUNC01G01670
Oryza punctata
OPUNC01G01670
N
0.860
ORGLA01G0016600
Oryza glaberrima
ORGLA01G0016600
N
0.860
ORUFI01G02010
Oryza rufipogon
ORUFI01G02010
N
0.860
Bostr.26959s0040
Boechera stricta
Bostr.26959s0040
N
0.860
Cagra.3364s0006
Capsella grandiflora
Cagra.3364s0006
N
0.860
Carubv10022391m.g
Capsella rubella
Carubv10022391m.g
N
0.860
Eucgr.F02492
Eucalyptus grandis
Eucgr.F02492
N
0.860
Eucgr.G02321
Eucalyptus grandis
Eucgr.G02321
N
0.860
evm.TU.supercontig_1.42
Carica papaya
evm.TU.supercontig_1.42
N
0.860
evm.TU.supercontig_3.514
Carica papaya
evm.TU.supercontig_3.514
N
0.860
Lus10028470.g
Linum usitatissimum
Lus10028470.g
N
0.860
Pavir.J11724
Panicum virgatum
Pavir.J11724
N
0.860
SapurV1A.0079s0150
Salix purpurea
SapurV1A.0079s0150
N
0.860
SapurV1A.0851s0010
Salix purpurea
SapurV1A.0851s0010
N
0.860
Bo1g156310
Brassica oleracea
Bo1g156310
N
0.837
Bo3g055690
Brassica oleracea
Bo3g055690
N
0.837
Bra021433
Brassica rapa
Bra021433
N
0.837
BRADI4G16740
Brachypodium distachyon
BRADI4G16740
N
0.837
BRADI4G16750
Brachypodium distachyon
BRADI4G16750
N
0.837
GLYMA13G07590
Glycine max
GLYMA13G07590
N
0.837
GLYMA19G06280
Glycine max
GLYMA19G06280
N
0.837
GRMZM2G060544
Zea mays
GRMZM2G060544
N
0.837
GRMZM2G132693
Zea mays
GRMZM2G132693
N
0.837
GRMZM2G386674
Zea mays
GRMZM2G386674
N
0.837
GSMUA_Achr4G06820_001
Musa acuminata
GSMUA_Achr4G06820_001
N
0.837
POPTR_0010s13480
Populus trichocarpa
POPTR_0010s13480
N
0.837
PRUPE_ppa011233mg
Prunus persica
PRUPE_ppa011233mg
N
0.837
Sb01g032580
Sorghum bicolor
Sb01g032580
N
0.837
Sb03g007270
Sorghum bicolor
Sb03g007270
N
0.837
Si004887m.g
Setaria italica
Si004887m.g
N
0.837
Traes_4DL_E0847FBC5
Triticum aestivum
Traes_4DL_E0847FBC5
N
0.837
VIT_01s0011g03540
Vitis vinifera
VIT_01s0011g03540
N
0.837
VIT_14s0006g02950
Vitis vinifera
VIT_14s0006g02950
N
0.837
Ca_22996
Cicer arietinum
Ca_22996
N
0.837
Cla020705
Citrullus lanatus
Cla020705
N
0.837
Pm029059
Prunus mume
Pm029059
N
0.837
28207.m000107
Ricinus communis
28207.m000107
N
0.837
Cucsa.283560
Cucumis sativus
Cucsa.283560
N
0.837
mgf017960m
Mimulus guttatus
mgf017960m
N
0.837
Eucgr.J01501
Eucalyptus grandis
Eucgr.J01501
N
0.837
evm.TU.supercontig_282.15
Carica papaya
evm.TU.supercontig_282.15
N
0.837
gene03741-v1.0-hybrid
Fragaria vesca
gene03741-v1.0-hybrid
N
0.837
Gorai.005G190300
Gossypium raimondii
Gorai.005G190300
N
0.837
MDP0000233303
Malus domestica
MDP0000233303
N
0.837
Pavir.Ea00650
Panicum virgatum
Pavir.Ea00650
N
0.837
Pavir.Eb02390
Panicum virgatum
Pavir.Eb02390
N
0.837
AMTR_s00079p00088960
Amborella trichopoda
AMTR_s00079p00088960
N
0.814
LBD41
Arabidopsis thaliana
AT3G02550
N
0.814
BGIOSGA001546
Oryza indica
BGIOSGA001546
N
0.814
LBD41
Arabidopsis lyrata
fgenesh2_kg.3__191__AT3G02550.1
N
0.814
GLYMA08G31143
Glycine max
GLYMA08G31143
N
0.814
GLYMA08G48040
Glycine max
GLYMA08G48040
N
0.814
GLYMA18G53440
Glycine max
GLYMA18G53440
N
0.814
GRMZM2G073044
Zea mays
GRMZM2G073044
N
0.814
GSMUA_Achr2G14600_001
Musa acuminata
GSMUA_Achr2G14600_001
N
0.814
GSMUA_Achr3G29520_001
Musa acuminata
GSMUA_Achr3G29520_001
N
0.814
GSMUA_Achr4G13790_001
Musa acuminata
GSMUA_Achr4G13790_001
N
0.814
GSMUA_Achr9G00580_001
Musa acuminata
GSMUA_Achr9G00580_001
N
0.814
LPERR01G15290
Leersia perrieri
LPERR01G15290
N
0.814
MLOC_58304
Hordeum vulgare
MLOC_58304
N
0.814
MTR_7g007010
Medicago truncatula
MTR_7g007010
N
0.814
OB01G27020
Oryza brachyantha
OB01G27020
N
0.814
OBART01G17510
Oryza barthii
OBART01G17510
N
0.814
OGLUM01G20320
Oryza glumaepatula
OGLUM01G20320
N
0.814
OMERI01G16320
Oryza meridionalis
OMERI01G16320
N
0.814
ONIVA01G19320
Oryza nivara
ONIVA01G19320
N
0.814
OPUNC01G18000
Oryza punctata
OPUNC01G18000
N
0.814
ORUFI01G19440
Oryza rufipogon
ORUFI01G19440
N
0.814
OS01G0511000
Oryza sativa
OS01G0511000
N
0.814
PGSC0003DMG400012653
Solanum tuberosum
PGSC0003DMG400012653
N
0.814
POPTR_0004s09920
Populus trichocarpa
POPTR_0004s09920
N
0.814
Si002412m.g
Setaria italica
Si002412m.g
N
0.814
Si022660m.g
Setaria italica
Si022660m.g
N
0.814
Solyc02g085910.2
Solanum lycopersicum
Solyc02g085910.2
N
0.814
TCM_019459
Theobroma cacao
TCM_019459
N
0.814
Traes_2AL_450404EA6
Triticum aestivum
Traes_2AL_450404EA6
N
0.814
Traes_2BL_3A840DB921
Triticum aestivum
Traes_2BL_3A840DB921
N
0.814
Traes_2DL_9D8B5B436
Triticum aestivum
Traes_2DL_9D8B5B436
N
0.814
Traes_4BL_7F70575F9
Triticum aestivum
Traes_4BL_7F70575F9
N
0.814
Traes_5BL_3EEBE3D51
Triticum aestivum
Traes_5BL_3EEBE3D51
N
0.814
Traes_5BS_3EEBE3D51
Triticum aestivum
Traes_5BS_3EEBE3D51
N
0.814
VIT_01s0011g03530
Vitis vinifera
VIT_01s0011g03530
N
0.814
Ca_05488
Cicer arietinum
Ca_05488
N
0.814
Cla007208
Citrullus lanatus
Cla007208
N
0.814
Cla019264
Citrullus lanatus
Cla019264
N
0.814
cassava60.valid.m1
Manihot esculenta
cassava60.valid.m1
N
0.814
cassava6185.valid.m1
Manihot esculenta
cassava6185.valid.m1
N
0.814
Cucsa.031350
Cucumis sativus
Cucsa.031350
N
0.814
Cucsa.199060
Cucumis sativus
Cucsa.199060
N
0.814
mgf011656m
Mimulus guttatus
mgf011656m
N
0.814
Aquca_026_00293
Aquilegia coerulea
Aquca_026_00293
N
0.814
Ciclev10016422m.g
Citrus clementina
Ciclev10016422m.g
N
0.814
Eucgr.B03016
Eucalyptus grandis
Eucgr.B03016
N
0.814
Eucgr.K02222
Eucalyptus grandis
Eucgr.K02222
N
0.814
Pavir.J00526
Panicum virgatum
Pavir.J00526
N
0.814
SapurV1A.0078s0410
Salix purpurea
SapurV1A.0078s0410
N
0.814
Thhalv10021328m.g
Eutrema salsugineum
Thhalv10021328m.g
N
0.814
chr1.LjT23D08.90.nc
Lotus japonicus
chr1.LjT23D08.90.nc
N
0.814
AC234149.1_FG002
Zea mays
AC234149.1_FG002
N
0.791
LBD40
Arabidopsis lyrata
Al_scaffold_0002_1337
N
0.791
LBD40
Arabidopsis thaliana
AT1G67100
N
0.791
Bo2g055410
Brassica oleracea
Bo2g055410
N
0.791
MTR_6g054150
Medicago truncatula
MTR_6g054150
N
0.791
PGSC0003DMG400014547
Solanum tuberosum
PGSC0003DMG400014547
N
0.791
POPTR_0005s15670
Populus trichocarpa
POPTR_0005s15670
N
0.791
POPTR_0012s05340
Populus trichocarpa
POPTR_0012s05340
N
0.791
Sb09g025700
Sorghum bicolor
Sb09g025700
N
0.791
Solyc05g009320.2
Solanum lycopersicum
Solyc05g009320.2
N
0.791
TCM_012338
Theobroma cacao
TCM_012338
N
0.791
TRAES3BF008500030CFD_g
Triticum aestivum
TRAES3BF008500030CFD_g
N
0.791
TRAES3BF008600030CFD_g
Triticum aestivum
TRAES3BF008600030CFD_g
N
0.791
Traes_4BL_D44ACD58E
Triticum aestivum
Traes_4BL_D44ACD58E
N
0.791
VIT_17s0000g03720
Vitis vinifera
VIT_17s0000g03720
N
0.791
Pm015540
Prunus mume
Pm015540
N
0.791
Bostr.26959s0198
Boechera stricta
Bostr.26959s0198
N
0.791
Bostr.2902s0344
Boechera stricta
Bostr.2902s0344
N
0.791
Cagra.6164s0006
Capsella grandiflora
Cagra.6164s0006
N
0.791
Cagra.6845s0054
Capsella grandiflora
Cagra.6845s0054
N
0.791
Carubv10000015m.g
Capsella rubella
Carubv10000015m.g
N
0.791
Carubv10002654m.g
Capsella rubella
Carubv10002654m.g
N
0.791
Carubv10021721m.g
Capsella rubella
Carubv10021721m.g
N
0.791
Ciclev10013705m.g
Citrus clementina
Ciclev10013705m.g
N
0.791
Ciclev10022068m.g
Citrus clementina
Ciclev10022068m.g
N
0.791
Gorai.006G061200
Gossypium raimondii
Gorai.006G061200
N
0.791
orange1.1g022591m.g
Citrus sinensis
orange1.1g022591m.g
N
0.791
orange1.1g038007m.g
Citrus sinensis
orange1.1g038007m.g
N
0.791
orange1.1g045357m.g
Citrus sinensis
orange1.1g045357m.g
N
0.791
SapurV1A.0315s0090
Salix purpurea
SapurV1A.0315s0090
N
0.791
PK03169.1
Cannabis sativa
PK03169.1
N
0.791
LjSGA_023437.1
Lotus japonicus
LjSGA_023437.1
N
0.791
MTR_6g054080
Medicago truncatula
MTR_6g054080
N
0.767
PGSC0003DMG400005719
Solanum tuberosum
PGSC0003DMG400005719
N
0.767
Solyc03g119530.2
Solanum lycopersicum
Solyc03g119530.2
N
0.767
MDP0000136037
Malus domestica
MDP0000136037
N
0.767
MDP0000794101
Malus domestica
MDP0000794101
N
0.767
Thhalv10019048m.g
Eutrema salsugineum
Thhalv10019048m.g
N
0.767
BGIOSGA010454
Oryza indica
BGIOSGA010454
N
0.744
GLYMA07G10180
Glycine max
GLYMA07G10180
N
0.744
GLYMA17G35440
Glycine max
GLYMA17G35440
N
0.744
GLYMA20G26910
Glycine max
GLYMA20G26910
N
0.744
GSMUA_Achr1G20970_001
Musa acuminata
GSMUA_Achr1G20970_001
N
0.744
LPERR03G19360
Leersia perrieri
LPERR03G19360
N
0.744
OB03G31560
Oryza brachyantha
OB03G31560
N
0.744
OBART03G22820
Oryza barthii
OBART03G22820
N
0.744
OGLUM03G23580
Oryza glumaepatula
OGLUM03G23580
N
0.744
OLONG_015384
Oryza longistaminata
OLONG_015384
N
0.744
OMERI03G20600
Oryza meridionalis
OMERI03G20600
N
0.744
ONIVA03G24370
Oryza nivara
ONIVA03G24370
N
0.744
OPUNC03G21330
Oryza punctata
OPUNC03G21330
N
0.744
ORGLA03G0213800
Oryza glaberrima
ORGLA03G0213800
N
0.744
ORUFI03G23490
Oryza rufipogon
ORUFI03G23490
N
0.744
OS03G0445700
Oryza sativa
OS03G0445700
N
0.744
gene02557-v1.0-hybrid
Fragaria vesca
gene02557-v1.0-hybrid
N
0.744
MDP0000487015
Malus domestica
MDP0000487015
N
0.744
MDP0000747679
Malus domestica
MDP0000747679
N
0.744
Bo7g118580
Brassica oleracea
Bo7g118580
N
0.721
GLYMA10G40421
Glycine max
GLYMA10G40421
N
0.721
GLYMA14G09750
Glycine max
GLYMA14G09750
N
0.721
GSMUA_Achr3G30130_001
Musa acuminata
GSMUA_Achr3G30130_001
N
0.721
PGSC0003DMG400024936
Solanum tuberosum
PGSC0003DMG400024936
N
0.721
PRUPE_ppa014964mg
Prunus persica
PRUPE_ppa014964mg
N
0.721
PRUPE_ppa022806mg
Prunus persica
PRUPE_ppa022806mg
N
0.721
SELMODRAFT_37566
Selaginella moellendorffii
SELMODRAFT_37566
N
0.721
SELMODRAFT_37570
Selaginella moellendorffii
SELMODRAFT_37570
N
0.721
Si037346m.g
Setaria italica
Si037346m.g
N
0.721
Solyc02g092550.2
Solanum lycopersicum
Solyc02g092550.2
N
0.721
Traes_2AS_942884399
Triticum aestivum
Traes_2AS_942884399
N
0.721
Ca_09342
Cicer arietinum
Ca_09342
N
0.721
Pm005389
Prunus mume
Pm005389
N
0.721
Pm021281
Prunus mume
Pm021281
N
0.721
cassava9459.m1
Manihot esculenta
cassava9459.m1
N
0.721
mgf016064m
Mimulus guttatus
mgf016064m
N
0.721
Cagra.10957s0002
Capsella grandiflora
Cagra.10957s0002
N
0.721
Carubv10005616m.g
Capsella rubella
Carubv10005616m.g
N
0.721
Ciclev10003746m.g
Citrus clementina
Ciclev10003746m.g
N
0.721
Ciclev10026374m.g
Citrus clementina
Ciclev10026374m.g
N
0.721
Eucgr.G01261
Eucalyptus grandis
Eucgr.G01261
N
0.721
Gorai.007G056300
Gossypium raimondii
Gorai.007G056300
N
0.721
Lus10011530.g
Linum usitatissimum
Lus10011530.g
N
0.721
Lus10019292.g
Linum usitatissimum
Lus10019292.g
N
0.721
MDP0000139025
Malus domestica
MDP0000139025
N
0.721
MDP0000247079
Malus domestica
MDP0000247079
N
0.721
MDP0000261146
Malus domestica
MDP0000261146
N
0.721
orange1.1g026365m.g
Citrus sinensis
orange1.1g026365m.g
N
0.721
orange1.1g029809m.g
Citrus sinensis
orange1.1g029809m.g
N
0.721
Pavir.J18418
Panicum virgatum
Pavir.J18418
N
0.721
SapurV1A.0336s0110
Salix purpurea
SapurV1A.0336s0110
N
0.721
PK04548.1
Cannabis sativa
PK04548.1
N
0.721