PK25573.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK25573.1 T247397_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.838 0.838
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.838 0.838
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.808 0.808
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.808 0.808
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.808 0.808
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.808 0.808
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.707 0.707
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.707 0.707
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK25573.1 LOB 18 117

Links

Other LOB family TFs
Other Cannabis sativa TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.949
Pm017935 Prunus mume Pm017935 I 0.939
MDP0000429067 Malus domestica MDP0000429067 I 0.929
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.909
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.909
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.899
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.899
Cla007069 Citrullus lanatus Cla007069 I 0.889
30174.m008897 Ricinus communis 30174.m008897 I 0.889
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.879
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.879
TCM_005497 Theobroma cacao TCM_005497 I 0.879
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.879
mgf020735m Mimulus guttatus mgf020735m I 0.879
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.879
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.869
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.869
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.869
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.869
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.869
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.869
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.869
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.860
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.860
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.859
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.859
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.859
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.859
OBART03G10450 Oryza barthii OBART03G10450 I 0.859
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.859
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.859
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.859
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.859
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.859
OS03G0246900 Oryza sativa OS03G0246900 I 0.859
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.859
30174.m008898 Ricinus communis 30174.m008898 I 0.859
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.859
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.859
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.859
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.859
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.859
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.859
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.857
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.848
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.848
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.848
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.848
Ca_19598 Cicer arietinum Ca_19598 I 0.848
Cla007068 Citrullus lanatus Cla007068 I 0.848
Pm017936 Prunus mume Pm017936 I 0.848
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.848
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.848
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.848
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.848
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.848
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.848
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.848
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.848
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.846
LBD19 Arabidopsis thaliana AT2G45410 D 0.838
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.838
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.838
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.838
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.838
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.838
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.838
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.838
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.838
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.838
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.838
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.838
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.833
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.832
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.830
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.828
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.828
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.828
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.828
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.828
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.828
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.828
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.822
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.822
PK23185.1 Cannabis sativa PK23185.1 I 0.820
Bo4g195520 Brassica oleracea Bo4g195520 I 0.818
Bo9g002160 Brassica oleracea Bo9g002160 I 0.818
Bra037323 Brassica rapa Bra037323 I 0.818
Bra040311 Brassica rapa Bra040311 I 0.818
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.818
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.818
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.818
OB10G12360 Oryza brachyantha OB10G12360 I 0.818
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.818
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.818
MDP0000254224 Malus domestica MDP0000254224 I 0.815
OB03G20590 Oryza brachyantha OB03G20590 I 0.813
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.813
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.809
Ca_20429 Cicer arietinum Ca_20429 I 0.809
LBD18 Arabidopsis thaliana AT2G45420 D 0.808
LBD30 Arabidopsis thaliana AT4G00220 D 0.808
Bo2g097560 Brassica oleracea Bo2g097560 I 0.808
Bo4g024610 Brassica oleracea Bo4g024610 I 0.808
Bo4g024620 Brassica oleracea Bo4g024620 I 0.808
Bra008514 Brassica rapa Bra008514 I 0.808
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.808
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.808
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.808
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.808
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.808
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.808
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.808
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.808
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.808
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.808
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.808
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.808
TCM_005496 Theobroma cacao TCM_005496 I 0.804
LBD31 Arabidopsis thaliana AT4G00210 I 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
Bra004908 Brassica rapa Bra004908 I 0.798
Bra004910 Brassica rapa Bra004910 I 0.798
Bra040312 Brassica rapa Bra040312 I 0.798
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.798
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
Bo4g195510 Brassica oleracea Bo4g195510 I 0.787
Bo9g002150 Brassica oleracea Bo9g002150 I 0.778
Bra037322 Brassica rapa Bra037322 I 0.778
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.778
Ca_20428 Cicer arietinum Ca_20428 I 0.778
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.778
Ca_19597 Cicer arietinum Ca_19597 I 0.774
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.768
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.768
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.768
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.768
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.768
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.768
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.765
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.758
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.747
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.747
TCM_025849 Theobroma cacao TCM_025849 I 0.747
Cla002965 Citrullus lanatus Cla002965 I 0.747
Pm028642 Prunus mume Pm028642 I 0.747
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.747
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.747
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.747
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.747
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.747
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.737
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
Bra036436 Brassica rapa Bra036436 I 0.737
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.737
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.737
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.737
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
TCM_004106 Theobroma cacao TCM_004106 I 0.737
Ca_12213 Cicer arietinum Ca_12213 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.737
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.737
mgf006429m Mimulus guttatus mgf006429m I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.737
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.737
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.737
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.737
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.737
MDP0000322059 Malus domestica MDP0000322059 I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.736
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.736
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.736
Bra001087 Brassica rapa Bra001087 I 0.735
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.727
OB08G30680 Oryza brachyantha OB08G30680 I 0.727
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.727
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.727
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.727
Cla021625 Citrullus lanatus Cla021625 I 0.727
Pm020629 Prunus mume Pm020629 I 0.727
30072.m000955 Ricinus communis 30072.m000955 I 0.727
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.727
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.727
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.727
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.727
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.722
Bo3g036000 Brassica oleracea Bo3g036000 I 0.720
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Bra004693 Brassica rapa Bra004693 I 0.717
F775_04528 Aegilops tauschii F775_04528 I 0.717
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.717
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.717
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
29883.m002035 Ricinus communis 29883.m002035 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.709
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.708
LBD16 Arabidopsis thaliana AT2G42430 D 0.707
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.707
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
Bra000257 Brassica rapa Bra000257 I 0.707
Bra016877 Brassica rapa Bra016877 I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.707
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.707
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.707
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.707
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.707
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.707
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.707
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.707
OS08G0563400 Oryza sativa OS08G0563400 I 0.707
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.707
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.707
PK00972.1 Cannabis sativa PK00972.1 I 0.700