AMTR_s00001p00251940 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00001p00251940 T247834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.837 0.716
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.837 0.716
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.812 0.687
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM96444 MADF 335 404

Links

Other MADF family TFs
Other Amborella trichopoda TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.881
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.873
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.873
TCM_037381 Theobroma cacao TCM_037381 I 0.870
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.868
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.868
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.859
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.852
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.852
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.852
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.852
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.850
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.849
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.846
OB02G10400 Oryza brachyantha OB02G10400 I 0.842
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.840
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.837
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.837
OBART02G00380 Oryza barthii OBART02G00380 I 0.837
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.837
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.837
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.837
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.837
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.837
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.837
OS02G0104500 Oryza sativa OS02G0104500 D 0.837
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.836
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.836
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.836
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.835
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.834
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.827
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.827
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.825
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.822
29739.m003611 Ricinus communis 29739.m003611 I 0.822
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.822
PK15172.1 Cannabis sativa PK15172.1 D 0.812