CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G063203
(
Zea mays
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
GRMZM2G063203
T249141_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.878
0.688
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.878
0.688
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G063203_P01
MADF
109
180
TEMDADFRSSPLKAPLWENVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKSYRFFSQLEAL
GRMZM2G063203_P01
MADF
420
494
MRNEKGEKYHDAGAKGPLWEDIAAAMRGIGYSRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAM
GRMZM2G063203_P02
MADF
109
180
TEMDADFRSSPLKAPLWENVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKSYRFFSQLEAL
GRMZM2G063203_P02
MADF
420
494
MRNEKGEKYHDAGAKGPLWEDIAAAMRGIGYSRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAM
GRMZM2G063203_P03
MADF
109
180
TEMDADFRSSPLKAPLWENVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKSYRFFSQLEAL
GRMZM2G063203_P03
MADF
420
494
MRNEKGEKYHDAGAKGPLWEDIAAAMRGIGYSRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAM
Links
Other
MADF
family TFs
Other
Zea mays
TFs
175 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_24861
Aegilops tauschii
F775_24861
N
0.823
F775_26337
Aegilops tauschii
F775_26337
I
0.902
AMTR_s00030p00088210
Amborella trichopoda
AMTR_s00030p00088210
I
0.889
AMTR_s00041p00147950
Amborella trichopoda
AMTR_s00041p00147950
I
0.888
Aquca_037_00343
Aquilegia coerulea
Aquca_037_00343
I
0.891
AT-GTL1
Arabidopsis lyrata
fgenesh2_kg.1__3451__AT1G33240.1
I
0.878
AT-GTL1
Arabidopsis thaliana
AT1G33240
D
0.878
Bostr.3359s0047
Boechera stricta
Bostr.3359s0047
I
0.839
BRADI1G77610
Brachypodium distachyon
BRADI1G77610
I
0.894
BRADI3G30457
Brachypodium distachyon
BRADI3G30457
I
0.909
BRADI5G17150
Brachypodium distachyon
BRADI5G17150
I
0.879
Bo2g091240
Brassica oleracea
Bo2g091240
I
0.824
Bo6g049430
Brassica oleracea
Bo6g049430
I
0.882
Bo8g027460
Brassica oleracea
Bo8g027460
I
0.831
Bra003702
Brassica rapa
Bra003702
I
0.823
Bra008285
Brassica rapa
Bra008285
I
0.824
Bra036731
Brassica rapa
Bra036731
I
0.831
Bra040010
Brassica rapa
Bra040010
I
0.882
PK24122.1
Cannabis sativa
PK24122.1
I
0.839
PK26613.1
Cannabis sativa
PK26613.1
I
0.844
Cagra.20992s0001
Capsella grandiflora
Cagra.20992s0001
I
0.850
Cagra.6133s0035
Capsella grandiflora
Cagra.6133s0035
I
0.882
Carubv10008638m.g
Capsella rubella
Carubv10008638m.g
I
0.882
Carubv10019974m.g
Capsella rubella
Carubv10019974m.g
I
0.850
evm.TU.supercontig_21.194
Carica papaya
evm.TU.supercontig_21.194
I
0.832
evm.TU.supercontig_2611.1
Carica papaya
evm.TU.supercontig_2611.1
I
0.873
evm.TU.supercontig_37.120
Carica papaya
evm.TU.supercontig_37.120
I
0.886
Ca_04385
Cicer arietinum
Ca_04385
I
0.842
Ca_04386
Cicer arietinum
Ca_04386
I
0.823
Cla001992
Citrullus lanatus
Cla001992
I
0.828
Cla005046
Citrullus lanatus
Cla005046
I
0.888
Cla007910
Citrullus lanatus
Cla007910
I
0.849
Ciclev10000593m.g
Citrus clementina
Ciclev10000593m.g
I
0.841
Ciclev10000627m.g
Citrus clementina
Ciclev10000627m.g
I
0.859
Ciclev10018915m.g
Citrus clementina
Ciclev10018915m.g
I
0.880
Ciclev10025533m.g
Citrus clementina
Ciclev10025533m.g
I
0.888
orange1.1g003766m.g
Citrus sinensis
orange1.1g003766m.g
I
0.880
orange1.1g006925m.g
Citrus sinensis
orange1.1g006925m.g
I
0.841
orange1.1g007316m.g
Citrus sinensis
orange1.1g007316m.g
I
0.859
orange1.1g012030m.g
Citrus sinensis
orange1.1g012030m.g
I
0.888
Cucsa.193210
Cucumis sativus
Cucsa.193210
I
0.884
Cucsa.204000
Cucumis sativus
Cucsa.204000
I
0.828
Cucsa.250070
Cucumis sativus
Cucsa.250070
I
0.841
Thhalv10007000m.g
Eutrema salsugineum
Thhalv10007000m.g
I
0.887
gene01828-v1.0-hybrid
Fragaria vesca
gene01828-v1.0-hybrid
I
0.885
gene08173-v1.0-hybrid
Fragaria vesca
gene08173-v1.0-hybrid
I
0.864
gene08175-v1.0-hybrid
Fragaria vesca
gene08175-v1.0-hybrid
I
0.858
GLYMA02G09060
Glycine max
GLYMA02G09060
I
0.840
GLYMA04G39400
Glycine max
GLYMA04G39400
N
0.839
GLYMA06G15500
Glycine max
GLYMA06G15500
N
0.821
GLYMA09G19750
Glycine max
GLYMA09G19750
N
0.839
GLYMA10G36950
Glycine max
GLYMA10G36950
I
0.870
GLYMA10G36960
Glycine max
GLYMA10G36960
I
0.853
GLYMA16G28250
Glycine max
GLYMA16G28250
I
0.832
GLYMA20G30640
Glycine max
GLYMA20G30640
I
0.853
Gorai.002G231500
Gossypium raimondii
Gorai.002G231500
I
0.842
Gorai.003G072300
Gossypium raimondii
Gorai.003G072300
I
0.890
Gorai.008G099700
Gossypium raimondii
Gorai.008G099700
I
0.854
Gorai.008G262400
Gossypium raimondii
Gorai.008G262400
I
0.884
Gorai.009G253700
Gossypium raimondii
Gorai.009G253700
I
0.827
Gorai.009G253900
Gossypium raimondii
Gorai.009G253900
I
0.849
MLOC_22988
Hordeum vulgare
MLOC_22988
I
0.898
MLOC_70549
Hordeum vulgare
MLOC_70549
I
0.890
MLOC_74813
Hordeum vulgare
MLOC_74813
I
0.934
LPERR02G21190
Leersia perrieri
LPERR02G21190
I
0.861
LPERR03G01010
Leersia perrieri
LPERR03G01010
I
0.913
LPERR04G16420
Leersia perrieri
LPERR04G16420
I
0.900
LPERR10G12070
Leersia perrieri
LPERR10G12070
I
0.906
Lus10018888.g
Linum usitatissimum
Lus10018888.g
I
0.841
MDP0000156139
Malus domestica
MDP0000156139
I
0.863
MDP0000451038
Malus domestica
MDP0000451038
I
0.888
MDP0000451107
Malus domestica
MDP0000451107
I
0.852
MDP0000701272
Malus domestica
MDP0000701272
I
0.891
cassava16715.m1
Manihot esculenta
cassava16715.m1
I
0.845
cassava16854.m1
Manihot esculenta
cassava16854.m1
I
0.842
cassava21480.m1
Manihot esculenta
cassava21480.m1
I
0.849
cassava22361.valid.m1
Manihot esculenta
cassava22361.valid.m1
I
0.878
cassava22362.valid.m1
Manihot esculenta
cassava22362.valid.m1
I
0.878
cassava22363.valid.m1
Manihot esculenta
cassava22363.valid.m1
I
0.878
cassava2484.valid.m1
Manihot esculenta
cassava2484.valid.m1
I
0.848
MTR_1g098870
Medicago truncatula
MTR_1g098870
I
0.854
MTR_1g098900
Medicago truncatula
MTR_1g098900
I
0.846
mgf004276m
Mimulus guttatus
mgf004276m
I
0.876
mgf018892m
Mimulus guttatus
mgf018892m
N
0.820
mgf021983m
Mimulus guttatus
mgf021983m
I
0.823
GSMUA_Achr11G03520_001
Musa acuminata
GSMUA_Achr11G03520_001
I
0.851
GSMUA_Achr5G19950_001
Musa acuminata
GSMUA_Achr5G19950_001
I
0.899
GSMUA_Achr9G18800_001
Musa acuminata
GSMUA_Achr9G18800_001
I
0.833
OBART02G25970
Oryza barthii
OBART02G25970
I
0.901
OBART04G20290
Oryza barthii
OBART04G20290
I
0.887
OB02G33250
Oryza brachyantha
OB02G33250
I
0.905
OB04G27270
Oryza brachyantha
OB04G27270
I
0.891
ORGLA02G0222200
Oryza glaberrima
ORGLA02G0222200
I
0.901
ORGLA03G0008300
Oryza glaberrima
ORGLA03G0008300
I
0.918
OGLUM02G26410
Oryza glumaepatula
OGLUM02G26410
I
0.901
OGLUM03G01010
Oryza glumaepatula
OGLUM03G01010
I
0.918
OGLUM04G20210
Oryza glumaepatula
OGLUM04G20210
I
0.887
OGLUM10G15720
Oryza glumaepatula
OGLUM10G15720
I
0.906
BGIOSGA005934
Oryza indica
BGIOSGA005934
I
0.901
BGIOSGA014631
Oryza indica
BGIOSGA014631
I
0.887
BGIOSGA031553
Oryza indica
BGIOSGA031553
I
0.906
OLONG_017894
Oryza longistaminata
OLONG_017894
I
0.891
OMERI03G00890
Oryza meridionalis
OMERI03G00890
I
0.918
OMERI10G12340
Oryza meridionalis
OMERI10G12340
I
0.906
ONIVA03G01170
Oryza nivara
ONIVA03G01170
I
0.918
ONIVA04G18520
Oryza nivara
ONIVA04G18520
I
0.887
ONIVA05G15440
Oryza nivara
ONIVA05G15440
I
0.901
ONIVA10G17310
Oryza nivara
ONIVA10G17310
I
0.906
OPUNC02G23730
Oryza punctata
OPUNC02G23730
I
0.901
OPUNC04G17930
Oryza punctata
OPUNC04G17930
I
0.891
OPUNC10G14260
Oryza punctata
OPUNC10G14260
I
0.896
ORUFI02G27390
Oryza rufipogon
ORUFI02G27390
I
0.901
ORUFI03G00820
Oryza rufipogon
ORUFI03G00820
I
0.918
ORUFI04G21880
Oryza rufipogon
ORUFI04G21880
I
0.887
ORUFI10G16810
Oryza rufipogon
ORUFI10G16810
I
0.906
Pavir.Ab02437
Panicum virgatum
Pavir.Ab02437
I
0.955
Pavir.Gb01188
Panicum virgatum
Pavir.Gb01188
I
0.892
Pavir.Ia04768
Panicum virgatum
Pavir.Ia04768
I
0.902
Pavir.Ib00103
Panicum virgatum
Pavir.Ib00103
I
0.902
e_gw1.85.39.1
Physcomitrella patens
e_gw1.85.39.1
I
0.846
gw1.19.47.1
Physcomitrella patens
gw1.19.47.1
I
0.846
POPTR_0001s31660
Populus trichocarpa
POPTR_0001s31660
I
0.870
POPTR_0001s45870
Populus trichocarpa
POPTR_0001s45870
I
0.896
POPTR_0002s06900
Populus trichocarpa
POPTR_0002s06900
I
0.894
POPTR_0002s06920
Populus trichocarpa
POPTR_0002s06920
I
0.833
POPTR_0005s21410
Populus trichocarpa
POPTR_0005s21410
I
0.827
POPTR_0005s21420
Populus trichocarpa
POPTR_0005s21420
I
0.893
POPTR_0011s15050
Populus trichocarpa
POPTR_0011s15050
I
0.889
POPTR_0019s02650
Populus trichocarpa
POPTR_0019s02650
I
0.856
Pm022570
Prunus mume
Pm022570
I
0.864
Pm022572
Prunus mume
Pm022572
I
0.859
Pm024289
Prunus mume
Pm024289
I
0.896
PRUPE_ppa001704mg
Prunus persica
PRUPE_ppa001704mg
I
0.896
PRUPE_ppa002848mg
Prunus persica
PRUPE_ppa002848mg
I
0.859
PRUPE_ppa021097mg
Prunus persica
PRUPE_ppa021097mg
I
0.858
29576.m000223
Ricinus communis
29576.m000223
I
0.879
30068.m002635
Ricinus communis
30068.m002635
I
0.898
30206.m000769
Ricinus communis
30206.m000769
I
0.859
SapurV1A.0047s0660
Salix purpurea
SapurV1A.0047s0660
I
0.882
SapurV1A.0066s0010
Salix purpurea
SapurV1A.0066s0010
I
0.876
SapurV1A.0231s0350
Salix purpurea
SapurV1A.0231s0350
I
0.869
SapurV1A.0285s0240
Salix purpurea
SapurV1A.0285s0240
I
0.896
SapurV1A.0625s0070
Salix purpurea
SapurV1A.0625s0070
I
0.824
SapurV1A.0625s0080
Salix purpurea
SapurV1A.0625s0080
I
0.888
SapurV1A.0655s0060
Salix purpurea
SapurV1A.0655s0060
I
0.856
SapurV1A.5612s0010
Salix purpurea
SapurV1A.5612s0010
I
0.824
SELMODRAFT_120369
Selaginella moellendorffii
SELMODRAFT_120369
I
0.850
SELMODRAFT_48639
Selaginella moellendorffii
SELMODRAFT_48639
I
0.885
SELMODRAFT_66294
Selaginella moellendorffii
SELMODRAFT_66294
I
0.885
SELMODRAFT_85122
Selaginella moellendorffii
SELMODRAFT_85122
I
0.850
Si012121m.g
Setaria italica
Si012121m.g
I
0.892
Si016578m.g
Setaria italica
Si016578m.g
I
0.960
Si034382m.g
Setaria italica
Si034382m.g
I
0.912
Solyc04g071360.2
Solanum lycopersicum
Solyc04g071360.2
I
0.841
Solyc12g056510.1
Solanum lycopersicum
Solyc12g056510.1
I
0.876
PGSC0003DMG400024107
Solanum tuberosum
PGSC0003DMG400024107
I
0.841
Sb01g017120
Sorghum bicolor
Sb01g017120
I
0.903
Sb04g033390
Sorghum bicolor
Sb04g033390
I
0.954
Sb06g023980
Sorghum bicolor
Sb06g023980
I
0.900
TCM_001348
Theobroma cacao
TCM_001348
I
0.859
TCM_015563
Theobroma cacao
TCM_015563
I
0.890
TCM_035565
Theobroma cacao
TCM_035565
I
0.858
TCM_035571
Theobroma cacao
TCM_035571
I
0.866
Traes_1BL_A5A91DE10
Triticum aestivum
Traes_1BL_A5A91DE10
I
0.900
Traes_2AL_9E68ABA72
Triticum aestivum
Traes_2AL_9E68ABA72
I
0.902
Traes_2BL_0B80B3876
Triticum aestivum
Traes_2BL_0B80B3876
I
0.902
TRIUR3_33328
Triticum urartu
TRIUR3_33328
I
0.900
TRIUR3_33826
Triticum urartu
TRIUR3_33826
I
0.901
AT-GTL1
Vitis vinifera
VIT_02s0025g03220
I
0.900
VIT_04s0044g00510
Vitis vinifera
VIT_04s0044g00510
I
0.858
VIT_18s0072g00670
Vitis vinifera
VIT_18s0072g00670
I
0.881
GRMZM2G016649
Zea mays
GRMZM2G016649
I
0.900
GRMZM2G169580
Zea mays
GRMZM2G169580
I
0.951
GRMZM2G414159
Zea mays
GRMZM2G414159
I
0.906