Cucsa.378670 (Cucumis sativus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cucsa.378670 T250490_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.958 0.840
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.958 0.840
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.958 0.840
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.954 0.813
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.378670.1 MADF 162 244
Cucsa.378670.2 MADF 162 244
Cucsa.378670.3 MADF 162 244

Links

Other MADF family TFs
Other Cucumis sativus TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla018015 Citrullus lanatus Cla018015 I 0.971
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.968
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.965
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.964
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.963
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.963
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.960
29815.m000504 Ricinus communis 29815.m000504 I 0.959
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.958
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.958
Pm026265 Prunus mume Pm026265 I 0.958
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.958
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.957
Bo5g137800 Brassica oleracea Bo5g137800 I 0.956
Bra029812 Brassica rapa Bra029812 I 0.956
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.956
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.956
Ca_20148 Cicer arietinum Ca_20148 I 0.956
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.956
PK04914.1 Cannabis sativa PK04914.1 D 0.954
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.953
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.952
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.952
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.952
TCM_022397 Theobroma cacao TCM_022397 I 0.947
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.947
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.940
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.934
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.934
mgf008067m Mimulus guttatus mgf008067m I 0.933
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.921
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.920
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.912
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.911
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.909
MDP0000201016 Malus domestica MDP0000201016 I 0.903
MDP0000399495 Malus domestica MDP0000399495 I 0.903
MDP0000415733 Malus domestica MDP0000415733 I 0.903
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.895
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.890
TCM_043551 Theobroma cacao TCM_043551 I 0.880
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.877
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.876
OB04G18670 Oryza brachyantha OB04G18670 I 0.876
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.876
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.876
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.876
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.874
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.872
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.872
28077.m000081 Ricinus communis 28077.m000081 I 0.872
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.871
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.866
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.866
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.865
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.865
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.854
F775_31501 Aegilops tauschii F775_31501 I 0.854
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.854
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.854
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.854
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.854
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.844
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.842
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.841
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.839
Si009787m.g Setaria italica Si009787m.g I 0.838