Gorai.001G020300 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.001G020300 T250699_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.857 0.691
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.857 0.691
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G020300.1 MADF 427 497

Links

Other MADF family TFs
Other Gossypium raimondii TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.953
TCM_037381 Theobroma cacao TCM_037381 I 0.938
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.906
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.906
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.899
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.895
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.895
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.884
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.884
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.884
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.883
29739.m003611 Ricinus communis 29739.m003611 I 0.882
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.881
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.881
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.881
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.878
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.871
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.871
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.871
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.871
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.866
OB02G10400 Oryza brachyantha OB02G10400 I 0.862
Si033157m.g Setaria italica Si033157m.g I 0.862
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.857
OBART02G00380 Oryza barthii OBART02G00380 I 0.857
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.857
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.857
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.857
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.857
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.857
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.857
OS02G0104500 Oryza sativa OS02G0104500 D 0.857
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.856
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.856
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.849
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.847
orange1.1g017956m.g Citrus sinensis orange1.1g017956m.g N 0.839
Ciclev10015695m.g Citrus clementina Ciclev10015695m.g N 0.828
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.825
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.825
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.825
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.825
evm.TU.supercontig_27.230 Carica papaya evm.TU.supercontig_27.230 N 0.820