MAF3 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G65060 T252938_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.894 0.894
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.787 0.787
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.787 0.787
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G65060.1 MADS box 10 56
AT5G65060.2 MADS box 10 56
AT5G65060.3 MADS box 10 56

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.957
AGL31 Arabidopsis thaliana AT5G65050 I 0.915
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.915
AGL27 Arabidopsis thaliana AT1G77080 D 0.894
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.894
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.872
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.872
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.851
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.851
Bra031888 Brassica rapa Bra031888 I 0.830
Bo2g166500 Brassica oleracea Bo2g166500 I 0.809
Bo3g100570 Brassica oleracea Bo3g100570 I 0.809
Bra024350 Brassica rapa Bra024350 I 0.809
FLC Arabidopsis thaliana AT5G10140 D 0.787
Bo3g005470 Brassica oleracea Bo3g005470 I 0.787
Bra006051 Brassica rapa Bra006051 I 0.787
Bra009055 Brassica rapa Bra009055 I 0.787
FLC Arabidopsis lyrata scaffold_601028.1 I 0.787
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.787
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.787
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.787
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.787
Bra028599 Brassica rapa Bra028599 I 0.771
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.771
MAF5 Arabidopsis thaliana AT5G65080 I 0.766
Bo9g173370 Brassica oleracea Bo9g173370 I 0.766
Bra024351 Brassica rapa Bra024351 I 0.766
Bra031884 Brassica rapa Bra031884 I 0.766
Bra031886 Brassica rapa Bra031886 I 0.766
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.766
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.750
Bo01054s010 Brassica oleracea Bo01054s010 I 0.745
Bo13628s010 Brassica oleracea Bo13628s010 I 0.745
Bo3g100540 Brassica oleracea Bo3g100540 I 0.745
Bo9g173400 Brassica oleracea Bo9g173400 I 0.745
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.745
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.729
MAF4 Arabidopsis thaliana AT5G65070 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Bo03856s010 Brassica oleracea Bo03856s010 I 0.702
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.702