CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo4g139620
(
Brassica oleracea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bo4g139620
T253114_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo4g139620.1
MADS box
13
56
YSLAATSLNSRLLTIFKKAQELTTLCDIGACVIHYGPDGELKTW
Links
Other
MADS box
family TFs
Other
Brassica oleracea
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0007_3741
Arabidopsis lyrata
Al_scaffold_0007_3741
I
0.818
scaffold_704060.1
Arabidopsis lyrata
scaffold_704060.1
I
0.818
fgenesh2_kg.7__3412__AT5G41200.1
Arabidopsis lyrata
fgenesh2_kg.7__3412__AT5G41200.1
I
0.818
AGL105
Arabidopsis thaliana
AT5G37415
I
0.769
AGL77
Arabidopsis thaliana
AT5G38740
I
0.818
AGL81
Arabidopsis thaliana
AT5G39750
I
0.818
AGL98
Arabidopsis thaliana
AT5G39810
I
0.745
AGL76
Arabidopsis thaliana
AT5G40120
I
0.818
AGL43
Arabidopsis thaliana
AT5G40220
I
0.818
AGL75
Arabidopsis thaliana
AT5G41200
I
0.818
Bostr.10058s0014
Boechera stricta
Bostr.10058s0014
I
0.727
Bo4g139560
Brassica oleracea
Bo4g139560
N
0.909
Bo4g139640
Brassica oleracea
Bo4g139640
N
0.909
Bo4g139260
Brassica oleracea
Bo4g139260
I
0.900
Bra025609
Brassica rapa
Bra025609
I
0.872
Bra025619
Brassica rapa
Bra025619
N
0.932
Bra025607
Brassica rapa
Bra025607
N
0.953
Thhalv10028184m.g
Eutrema salsugineum
Thhalv10028184m.g
I
0.773
Thhalv10028282m.g
Eutrema salsugineum
Thhalv10028282m.g
I
0.739