CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo9g173400
(
Brassica oleracea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bo9g173400
T253210_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.958
0.958
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.958
0.958
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.958
0.958
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.792
0.792
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo9g173400.1
MADS box
10
57
PIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASRKLYSF
Links
Other
MADS box
family TFs
Other
Brassica oleracea
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MAF4
Arabidopsis lyrata
Al_scaffold_0008_3055
I
0.750
Aquca_032_00047
Aquilegia coerulea
Aquca_032_00047
I
0.708
AGL27
Arabidopsis thaliana
AT1G77080
D
0.809
FLC
Arabidopsis thaliana
AT5G10140
D
0.958
AGL31
Arabidopsis thaliana
AT5G65050
I
0.809
MAF3
Arabidopsis thaliana
AT5G65060
I
0.745
MAF4
Arabidopsis thaliana
AT5G65070
I
0.750
MAF5
Arabidopsis thaliana
AT5G65080
I
0.745
Bo01054s010
Brassica oleracea
Bo01054s010
I
0.771
Bo13628s010
Brassica oleracea
Bo13628s010
I
1.000
Bo1g031900
Brassica oleracea
Bo1g031900
I
0.708
Bo2g166500
Brassica oleracea
Bo2g166500
I
0.812
Bo3g005470
Brassica oleracea
Bo3g005470
I
0.875
Bo3g024250
Brassica oleracea
Bo3g024250
I
0.875
Bo3g100540
Brassica oleracea
Bo3g100540
I
0.766
Bo3g100570
Brassica oleracea
Bo3g100570
I
0.830
Bo4g024840
Brassica oleracea
Bo4g024840
I
0.708
Bo9g173370
Brassica oleracea
Bo9g173370
I
0.979
Bostr.0568s0285
Boechera stricta
Bostr.0568s0285
I
0.787
Bostr.13175s0088
Boechera stricta
Bostr.13175s0088
I
0.938
Bostr.18351s0063
Boechera stricta
Bostr.18351s0063
I
0.958
Bostr.7867s0083
Boechera stricta
Bostr.7867s0083
I
0.708
Bra000392
Brassica rapa
Bra000392
I
0.708
Bra004927
Brassica rapa
Bra004927
I
0.708
Bra006051
Brassica rapa
Bra006051
I
0.917
Bra009055
Brassica rapa
Bra009055
I
0.958
Bra013662
Brassica rapa
Bra013662
I
0.708
Bra022771
Brassica rapa
Bra022771
I
0.854
Bra024350
Brassica rapa
Bra024350
I
0.830
Bra024351
Brassica rapa
Bra024351
I
0.787
Bra028599
Brassica rapa
Bra028599
I
0.938
Bra031884
Brassica rapa
Bra031884
I
0.766
Bra031886
Brassica rapa
Bra031886
I
0.766
Bra031888
Brassica rapa
Bra031888
I
0.851
Cagra.0450s0030
Capsella grandiflora
Cagra.0450s0030
I
0.812
Cagra.0917s0078
Capsella grandiflora
Cagra.0917s0078
I
0.750
Cagra.0917s0080
Capsella grandiflora
Cagra.0917s0080
I
0.750
Cagra.0917s0081
Capsella grandiflora
Cagra.0917s0081
I
0.787
Cagra.1085s0045
Capsella grandiflora
Cagra.1085s0045
I
0.958
Carubv10020979m.g
Capsella rubella
Carubv10020979m.g
I
0.812
Carubv10028173m.g
Capsella rubella
Carubv10028173m.g
I
0.771
cassava15798.m1
Manihot esculenta
cassava15798.m1
I
0.708
cassava28648.m1
Manihot esculenta
cassava28648.m1
I
0.708
Ca_16423
Cicer arietinum
Ca_16423
I
0.708
Cla002664
Citrullus lanatus
Cla002664
I
0.708
Cucsa.392160
Cucumis sativus
Cucsa.392160
I
0.708
Eucgr.K02711
Eucalyptus grandis
Eucgr.K02711
I
0.708
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.729
fgenesh2_kg.233__4__AT5G65050.3
Arabidopsis lyrata
fgenesh2_kg.233__4__AT5G65050.3
I
0.766
MAF1
Arabidopsis lyrata
fgenesh2_kg.2__2000__AT1G77080.2
I
0.792
fgenesh2_kg.8__2543__AT5G65050.2
Arabidopsis lyrata
fgenesh2_kg.8__2543__AT5G65050.2
I
0.809
GLYMA03G02191
Glycine max
GLYMA03G02191
I
0.708
GLYMA08G11110
Glycine max
GLYMA08G11110
I
0.702
GRMZM2G026223
Zea mays
GRMZM2G026223
I
0.708
GRMZM2G171365
Zea mays
GRMZM2G171365
I
0.708
Lus10036543.g
Linum usitatissimum
Lus10036543.g
I
0.729
MDP0000135652
Malus domestica
MDP0000135652
I
0.708
MDP0000144516
Malus domestica
MDP0000144516
I
0.708
MDP0000248130
Malus domestica
MDP0000248130
I
0.708
MDP0000270062
Malus domestica
MDP0000270062
I
0.708
MDP0000326906
Malus domestica
MDP0000326906
I
0.708
MDP0000574222
Malus domestica
MDP0000574222
I
0.708
mgf006616m
Mimulus guttatus
mgf006616m
I
0.708
mgf021705m
Mimulus guttatus
mgf021705m
I
0.708
MTR_4g102530
Medicago truncatula
MTR_4g102530
I
0.708
OB03G11760
Oryza brachyantha
OB03G11760
I
0.708
OB07G27140
Oryza brachyantha
OB07G27140
I
0.708
OBART03G01800
Oryza barthii
OBART03G01800
I
0.708
OGLUM03G01750
Oryza glumaepatula
OGLUM03G01750
I
0.708
OLONG_010918
Oryza longistaminata
OLONG_010918
I
0.708
OMERI03G01730
Oryza meridionalis
OMERI03G01730
I
0.708
ONIVA03G01420
Oryza nivara
ONIVA03G01420
I
0.708
OPUNC03G01630
Oryza punctata
OPUNC03G01630
I
0.708
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.727
ORGLA03G0015400
Oryza glaberrima
ORGLA03G0015400
I
0.708
ORUFI03G01510
Oryza rufipogon
ORUFI03G01510
I
0.708
MADS50
Oryza sativa
OS03G0122600
D
0.708
Pavir.Ab00058
Panicum virgatum
Pavir.Ab00058
I
0.708
Pavir.Ib00012
Panicum virgatum
Pavir.Ib00012
I
0.708
PDK_20s1674411g001
Phoenix dactylifera
PDK_20s1674411g001
I
0.708
PGSC0003DMG400001377
Solanum tuberosum
PGSC0003DMG400001377
I
0.708
PK14825.1
Cannabis sativa
PK14825.1
I
0.708
POPTR_0001s08510
Populus trichocarpa
POPTR_0001s08510
I
0.708
POPTR_0001s13660
Populus trichocarpa
POPTR_0001s13660
I
0.750
POPTR_0003s16820
Populus trichocarpa
POPTR_0003s16820
I
0.708
POPTR_0003s16840
Populus trichocarpa
POPTR_0003s16840
I
0.750
POPTR_0003s16850
Populus trichocarpa
POPTR_0003s16850
I
0.708
POPTR_0003s16870
Populus trichocarpa
POPTR_0003s16870
I
0.750
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.708
POPTR_0014s07020
Populus trichocarpa
POPTR_0014s07020
I
0.708
PRUPE_ppa022942mg
Prunus persica
PRUPE_ppa022942mg
I
0.708
SapurV1A.0045s0580
Salix purpurea
SapurV1A.0045s0580
I
0.708
SapurV1A.0068s0650
Salix purpurea
SapurV1A.0068s0650
I
0.708
SapurV1A.0173s0350
Salix purpurea
SapurV1A.0173s0350
I
0.708
SapurV1A.0282s0240
Salix purpurea
SapurV1A.0282s0240
I
0.708
SapurV1A.0578s0130
Salix purpurea
SapurV1A.0578s0130
I
0.708
SapurV1A.1446s0020
Salix purpurea
SapurV1A.1446s0020
I
0.708
SapurV1A.1717s0010
Salix purpurea
SapurV1A.1717s0010
I
0.708
SapurV1A.2188s0030
Salix purpurea
SapurV1A.2188s0030
I
0.708
SapurV1A.5743s0010
Salix purpurea
SapurV1A.5743s0010
I
0.708
Sb06g026300
Sorghum bicolor
Sb06g026300
I
0.708
FLC
Arabidopsis lyrata
scaffold_601028.1
I
0.958
Si010898m.g
Setaria italica
Si010898m.g
I
0.708
Si038257m.g
Setaria italica
Si038257m.g
I
0.708
Solyc02g089200.2
Solanum lycopersicum
Solyc02g089200.2
I
0.708
Thhalv10001597m.g
Eutrema salsugineum
Thhalv10001597m.g
I
0.708
Thhalv10004949m.g
Eutrema salsugineum
Thhalv10004949m.g
I
0.787
Thhalv10005413m.g
Eutrema salsugineum
Thhalv10005413m.g
I
0.767
Thhalv10014726m.g
Eutrema salsugineum
Thhalv10014726m.g
I
0.958
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.724