CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra020242
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra020242
T253299_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra020242.1-P
MADS box
14
61
KIEKEKNLQVTFCKRKNGLFKKANELCTLCNARVAIILFSPSGKIFSF
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo2g024900
Brassica oleracea
Bo2g024900
N
0.979
Bo2g024870
Brassica oleracea
Bo2g024870
N
0.875
Bra020247
Brassica rapa
Bra020247
N
0.771
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.729
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.729
TCM_040735
Theobroma cacao
TCM_040735
N
0.729
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.729
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.729
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.729
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.708
AGL23
Arabidopsis thaliana
AT1G65360
N
0.708
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.708
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.708
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.708
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.708
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.708
Pm021070
Prunus mume
Pm021070
N
0.708
Pm021071
Prunus mume
Pm021071
N
0.708
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.708
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.708