CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra022434
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra022434
T253313_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra022434.1-P
MADS box
15
62
KMKNENNLQVTFSKRRNGLFKKASELCTLCGVEIVVIVFSPGKKVFSF
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
256 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29613.m000367
Ricinus communis
29613.m000367
N
0.750
29838.m001672
Ricinus communis
29838.m001672
N
0.708
30099.m001671
Ricinus communis
30099.m001671
N
0.729
30099.m001672
Ricinus communis
30099.m001672
N
0.854
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.792
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.771
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.771
AGL28
Arabidopsis thaliana
AT1G01530
N
0.750
AGL23
Arabidopsis thaliana
AT1G65360
N
0.729
AGL61
Arabidopsis thaliana
AT2G24840
N
0.771
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.833
AGL62
Arabidopsis thaliana
AT5G60440
I
0.833
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.938
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.771
Bo4g070340
Brassica oleracea
Bo4g070340
N
0.787
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.708
Bo4g165540
Brassica oleracea
Bo4g165540
N
0.771
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.958
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.750
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.792
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.875
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.812
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.875
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.771
Bra002480
Brassica rapa
Bra002480
N
0.771
Bra007829
Brassica rapa
Bra007829
N
0.750
Bra011938
Brassica rapa
Bra011938
N
0.792
Bra020247
Brassica rapa
Bra020247
N
0.729
Bra026764
Brassica rapa
Bra026764
N
0.729
Bra032057
Brassica rapa
Bra032057
N
0.729
Bra035685
Brassica rapa
Bra035685
N
0.745
Bra038225
Brassica rapa
Bra038225
N
0.917
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.771
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.792
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.750
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.875
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.792
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.750
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.771
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.875
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.729
cassava21573.m1
Manihot esculenta
cassava21573.m1
N
0.708
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.875
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.729
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.771
Ca_04659
Cicer arietinum
Ca_04659
N
0.854
Ca_04660
Cicer arietinum
Ca_04660
N
0.854
Ca_04661
Cicer arietinum
Ca_04661
N
0.854
Ca_04662
Cicer arietinum
Ca_04662
N
0.750
Ca_04665
Cicer arietinum
Ca_04665
N
0.812
Ca_07607
Cicer arietinum
Ca_07607
N
0.729
Ca_26354
Cicer arietinum
Ca_26354
N
0.729
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.750
chr2.CM0250.170.nc
Lotus japonicus
chr2.CM0250.170.nc
N
0.708
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.812
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.854
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.771
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.750
Ciclev10013802m.g
Citrus clementina
Ciclev10013802m.g
N
0.729
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.854
Cla006571
Citrullus lanatus
Cla006571
N
0.875
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.875
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.771
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.771
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.812
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.792
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.812
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.771
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.792
evm.TU.contig_27553.5
Carica papaya
evm.TU.contig_27553.5
N
0.723
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.812
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.833
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.812
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.792
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.812
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.812
evm.TU.contig_33091.3
Carica papaya
evm.TU.contig_33091.3
N
0.750
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.771
evm.TU.contig_35157.2
Carica papaya
evm.TU.contig_35157.2
N
0.771
evm.TU.contig_35697
Carica papaya
evm.TU.contig_35697
N
0.750
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.833
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.833
evm.TU.contig_37082
Carica papaya
evm.TU.contig_37082
N
0.792
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.833
evm.TU.contig_37489
Carica papaya
evm.TU.contig_37489
N
0.700
evm.TU.contig_38155.1
Carica papaya
evm.TU.contig_38155.1
N
0.750
evm.TU.contig_38604
Carica papaya
evm.TU.contig_38604
N
0.750
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.833
evm.TU.contig_43014
Carica papaya
evm.TU.contig_43014
N
0.708
evm.TU.contig_46312
Carica papaya
evm.TU.contig_46312
N
0.708
evm.TU.contig_47064.2
Carica papaya
evm.TU.contig_47064.2
N
0.723
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.833
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.875
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.792
evm.TU.supercontig_106.21
Carica papaya
evm.TU.supercontig_106.21
N
0.708
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.792
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.812
evm.TU.supercontig_347.10
Carica papaya
evm.TU.supercontig_347.10
N
0.812
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.812
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.792
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.833
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.792
evm.TU.supercontig_348.1
Carica papaya
evm.TU.supercontig_348.1
N
0.708
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.792
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.812
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.812
evm.TU.supercontig_348.9
Carica papaya
evm.TU.supercontig_348.9
N
0.750
evm.TU.supercontig_439.1
Carica papaya
evm.TU.supercontig_439.1
N
0.750
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.833
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.812
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.812
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.792
evm.TU.supercontig_505.6
Carica papaya
evm.TU.supercontig_505.6
N
0.771
evm.TU.supercontig_54.67
Carica papaya
evm.TU.supercontig_54.67
N
0.729
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.792
evm.TU.supercontig_625.2
Carica papaya
evm.TU.supercontig_625.2
N
0.708
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.833
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.812
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.792
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.833
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.812
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.792
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.812
evm.TU.supercontig_695.8
Carica papaya
evm.TU.supercontig_695.8
N
0.729
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.812
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.812
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.812
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.812
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.854
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.854
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.729
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.833
GLYMA02G35080
Glycine max
GLYMA02G35080
N
0.702
GLYMA10G10295
Glycine max
GLYMA10G10295
N
0.708
GLYMA10G10640
Glycine max
GLYMA10G10640
N
0.771
GLYMA10G10690
Glycine max
GLYMA10G10690
N
0.750
GLYMA10G10770
Glycine max
GLYMA10G10770
N
0.729
GLYMA10G10840
Glycine max
GLYMA10G10840
N
0.750
GLYMA10G10860
Glycine max
GLYMA10G10860
N
0.750
GLYMA10G10900
Glycine max
GLYMA10G10900
N
0.729
GLYMA10G10920
Glycine max
GLYMA10G10920
N
0.729
GLYMA10G10930
Glycine max
GLYMA10G10930
N
0.750
GLYMA10G11450
Glycine max
GLYMA10G11450
N
0.729
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.729
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.771
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.812
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.792
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.812
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.792
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.812
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.729
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.854
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.875
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.792
Gorai.012G163200
Gossypium raimondii
Gorai.012G163200
N
0.708
Gorai.N026300
Gossypium raimondii
Gorai.N026300
N
0.708
LjSGA_025167.1
Lotus japonicus
LjSGA_025167.1
N
0.792
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.708
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.729
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.771
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.792
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.771
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.750
MDP0000168914
Malus domestica
MDP0000168914
N
0.792
MDP0000221590
Malus domestica
MDP0000221590
N
0.833
MDP0000233925
Malus domestica
MDP0000233925
N
0.812
MDP0000278770
Malus domestica
MDP0000278770
N
0.812
MDP0000434703
Malus domestica
MDP0000434703
I
0.833
mgf018529m
Mimulus guttatus
mgf018529m
N
0.792
mgf022147m
Mimulus guttatus
mgf022147m
N
0.708
mgf022790m
Mimulus guttatus
mgf022790m
N
0.750
mgf024307m
Mimulus guttatus
mgf024307m
N
0.792
MTR_0121s0080
Medicago truncatula
MTR_0121s0080
N
0.708
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.792
MTR_1g075570
Medicago truncatula
MTR_1g075570
N
0.733
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.812
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.812
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.750
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.792
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.792
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.727
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.771
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.729
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.750
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.792
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.792
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.729
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.771
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.792
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.792
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.745
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.729
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.792
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.729
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.792
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.792
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.854
orange1.1g045481m.g
Citrus sinensis
orange1.1g045481m.g
N
0.729
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.812
PGSC0003DMG400034832
Solanum tuberosum
PGSC0003DMG400034832
N
0.714
PGSC0003DMG400035221
Solanum tuberosum
PGSC0003DMG400035221
N
0.708
PGSC0003DMG400036006
Solanum tuberosum
PGSC0003DMG400036006
N
0.702
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.729
PGSC0003DMG400040127
Solanum tuberosum
PGSC0003DMG400040127
N
0.771
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.750
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.750
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.792
PGSC0003DMG400044513
Solanum tuberosum
PGSC0003DMG400044513
N
0.708
PGSC0003DMG400045239
Solanum tuberosum
PGSC0003DMG400045239
N
0.729
Pm016629
Prunus mume
Pm016629
N
0.708
Pm021017
Prunus mume
Pm021017
N
0.792
Pm021018
Prunus mume
Pm021018
N
0.812
Pm021070
Prunus mume
Pm021070
N
0.771
Pm021071
Prunus mume
Pm021071
N
0.833
POPTR_0007s03410
Populus trichocarpa
POPTR_0007s03410
N
0.714
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.771
POPTR_0008s04110
Populus trichocarpa
POPTR_0008s04110
N
0.708
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.729
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.792
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.812
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.771
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.792
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.708
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.708
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.812
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.833
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.812
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.750
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.771
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.812
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.812
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.729
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.792
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.812
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.833
Solyc04g025050.1
Solanum lycopersicum
Solyc04g025050.1
N
0.723
TCM_006323
Theobroma cacao
TCM_006323
N
0.854
TCM_006324
Theobroma cacao
TCM_006324
N
0.729
TCM_040735
Theobroma cacao
TCM_040735
N
0.771
Thhalv10000432m.g
Eutrema salsugineum
Thhalv10000432m.g
N
0.729
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.771
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.771
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.792
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.737
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.792
Thhalv10017754m.g
Eutrema salsugineum
Thhalv10017754m.g
N
0.792
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.896
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.792
Thhalv10028255m.g
Eutrema salsugineum
Thhalv10028255m.g
N
0.708
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.792
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.792
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.812
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.833
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.729
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.792
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.729