CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra022434
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra022434
T253313_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra022434.1-P
MADS box
15
62
KMKNENNLQVTFSKRRNGLFKKASELCTLCGVEIVVIVFSPGKKVFSF
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
256 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.792
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.771
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.771
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.854
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.854
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.812
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.729
AGL28
Arabidopsis thaliana
AT1G01530
N
0.750
AGL23
Arabidopsis thaliana
AT1G65360
N
0.729
AGL61
Arabidopsis thaliana
AT2G24840
N
0.771
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.833
AGL62
Arabidopsis thaliana
AT5G60440
I
0.833
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.875
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.812
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.875
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.771
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.938
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.771
Bo4g070340
Brassica oleracea
Bo4g070340
N
0.787
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.708
Bo4g165540
Brassica oleracea
Bo4g165540
N
0.771
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.958
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.750
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.792
Bra002480
Brassica rapa
Bra002480
N
0.771
Bra007829
Brassica rapa
Bra007829
N
0.750
Bra011938
Brassica rapa
Bra011938
N
0.792
Bra020247
Brassica rapa
Bra020247
N
0.729
Bra026764
Brassica rapa
Bra026764
N
0.729
Bra032057
Brassica rapa
Bra032057
N
0.729
Bra035685
Brassica rapa
Bra035685
N
0.745
Bra038225
Brassica rapa
Bra038225
N
0.917
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.771
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.792
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.750
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.875
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.792
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.750
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.771
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.875
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.812
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.792
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.812
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.771
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.792
evm.TU.contig_27553.5
Carica papaya
evm.TU.contig_27553.5
N
0.723
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.812
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.833
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.812
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.792
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.812
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.812
evm.TU.contig_33091.3
Carica papaya
evm.TU.contig_33091.3
N
0.750
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.771
evm.TU.contig_35157.2
Carica papaya
evm.TU.contig_35157.2
N
0.771
evm.TU.contig_35697
Carica papaya
evm.TU.contig_35697
N
0.750
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.833
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.833
evm.TU.contig_37082
Carica papaya
evm.TU.contig_37082
N
0.792
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.833
evm.TU.contig_37489
Carica papaya
evm.TU.contig_37489
N
0.700
evm.TU.contig_38155.1
Carica papaya
evm.TU.contig_38155.1
N
0.750
evm.TU.contig_38604
Carica papaya
evm.TU.contig_38604
N
0.750
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.833
evm.TU.contig_43014
Carica papaya
evm.TU.contig_43014
N
0.708
evm.TU.contig_46312
Carica papaya
evm.TU.contig_46312
N
0.708
evm.TU.contig_47064.2
Carica papaya
evm.TU.contig_47064.2
N
0.723
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.833
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.875
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.792
evm.TU.supercontig_106.21
Carica papaya
evm.TU.supercontig_106.21
N
0.708
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.792
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.812
evm.TU.supercontig_347.10
Carica papaya
evm.TU.supercontig_347.10
N
0.812
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.812
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.792
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.833
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.792
evm.TU.supercontig_348.1
Carica papaya
evm.TU.supercontig_348.1
N
0.708
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.792
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.812
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.812
evm.TU.supercontig_348.9
Carica papaya
evm.TU.supercontig_348.9
N
0.750
evm.TU.supercontig_439.1
Carica papaya
evm.TU.supercontig_439.1
N
0.750
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.833
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.812
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.812
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.792
evm.TU.supercontig_505.6
Carica papaya
evm.TU.supercontig_505.6
N
0.771
evm.TU.supercontig_54.67
Carica papaya
evm.TU.supercontig_54.67
N
0.729
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.792
evm.TU.supercontig_625.2
Carica papaya
evm.TU.supercontig_625.2
N
0.708
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.833
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.812
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.792
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.833
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.812
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.792
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.812
evm.TU.supercontig_695.8
Carica papaya
evm.TU.supercontig_695.8
N
0.729
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.812
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.812
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.812
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.812
Ca_04659
Cicer arietinum
Ca_04659
N
0.854
Ca_04660
Cicer arietinum
Ca_04660
N
0.854
Ca_04661
Cicer arietinum
Ca_04661
N
0.854
Ca_04662
Cicer arietinum
Ca_04662
N
0.750
Ca_04665
Cicer arietinum
Ca_04665
N
0.812
Ca_07607
Cicer arietinum
Ca_07607
N
0.729
Ca_26354
Cicer arietinum
Ca_26354
N
0.729
Cla006571
Citrullus lanatus
Cla006571
N
0.875
Ciclev10013802m.g
Citrus clementina
Ciclev10013802m.g
N
0.729
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.854
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.854
orange1.1g045481m.g
Citrus sinensis
orange1.1g045481m.g
N
0.729
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.875
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.771
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.771
Thhalv10000432m.g
Eutrema salsugineum
Thhalv10000432m.g
N
0.729
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.771
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.771
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.792
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.737
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.792
Thhalv10017754m.g
Eutrema salsugineum
Thhalv10017754m.g
N
0.792
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.896
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.792
Thhalv10028255m.g
Eutrema salsugineum
Thhalv10028255m.g
N
0.708
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.729
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.833
GLYMA02G35080
Glycine max
GLYMA02G35080
N
0.702
GLYMA10G10295
Glycine max
GLYMA10G10295
N
0.708
GLYMA10G10640
Glycine max
GLYMA10G10640
N
0.771
GLYMA10G10690
Glycine max
GLYMA10G10690
N
0.750
GLYMA10G10770
Glycine max
GLYMA10G10770
N
0.729
GLYMA10G10840
Glycine max
GLYMA10G10840
N
0.750
GLYMA10G10860
Glycine max
GLYMA10G10860
N
0.750
GLYMA10G10900
Glycine max
GLYMA10G10900
N
0.729
GLYMA10G10920
Glycine max
GLYMA10G10920
N
0.729
GLYMA10G10930
Glycine max
GLYMA10G10930
N
0.750
GLYMA10G11450
Glycine max
GLYMA10G11450
N
0.729
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.729
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.771
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.812
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.792
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.812
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.792
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.812
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.729
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.854
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.875
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.792
Gorai.012G163200
Gossypium raimondii
Gorai.012G163200
N
0.708
Gorai.N026300
Gossypium raimondii
Gorai.N026300
N
0.708
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.771
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.792
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.771
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.750
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.750
chr2.CM0250.170.nc
Lotus japonicus
chr2.CM0250.170.nc
N
0.708
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.812
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.854
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.771
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.750
LjSGA_025167.1
Lotus japonicus
LjSGA_025167.1
N
0.792
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.708
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.729
MDP0000168914
Malus domestica
MDP0000168914
N
0.792
MDP0000221590
Malus domestica
MDP0000221590
N
0.833
MDP0000233925
Malus domestica
MDP0000233925
N
0.812
MDP0000278770
Malus domestica
MDP0000278770
N
0.812
MDP0000434703
Malus domestica
MDP0000434703
I
0.833
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.729
cassava21573.m1
Manihot esculenta
cassava21573.m1
N
0.708
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.875
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.729
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.771
MTR_0121s0080
Medicago truncatula
MTR_0121s0080
N
0.708
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.792
MTR_1g075570
Medicago truncatula
MTR_1g075570
N
0.733
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.812
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.812
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.750
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.792
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.792
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.727
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.771
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.729
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.750
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.792
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.792
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.729
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.771
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.792
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.792
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.745
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.729
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.792
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.729
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.792
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.792
mgf018529m
Mimulus guttatus
mgf018529m
N
0.792
mgf022147m
Mimulus guttatus
mgf022147m
N
0.708
mgf022790m
Mimulus guttatus
mgf022790m
N
0.750
mgf024307m
Mimulus guttatus
mgf024307m
N
0.792
POPTR_0007s03410
Populus trichocarpa
POPTR_0007s03410
N
0.714
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.771
POPTR_0008s04110
Populus trichocarpa
POPTR_0008s04110
N
0.708
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.729
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.792
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.812
Pm016629
Prunus mume
Pm016629
N
0.708
Pm021017
Prunus mume
Pm021017
N
0.792
Pm021018
Prunus mume
Pm021018
N
0.812
Pm021070
Prunus mume
Pm021070
N
0.771
Pm021071
Prunus mume
Pm021071
N
0.833
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.771
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.792
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.708
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.708
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.812
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.833
29613.m000367
Ricinus communis
29613.m000367
N
0.750
29838.m001672
Ricinus communis
29838.m001672
N
0.708
30099.m001671
Ricinus communis
30099.m001671
N
0.729
30099.m001672
Ricinus communis
30099.m001672
N
0.854
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.812
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.750
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.771
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.812
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.792
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.812
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.833
Solyc04g025050.1
Solanum lycopersicum
Solyc04g025050.1
N
0.723
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.812
PGSC0003DMG400034832
Solanum tuberosum
PGSC0003DMG400034832
N
0.714
PGSC0003DMG400035221
Solanum tuberosum
PGSC0003DMG400035221
N
0.708
PGSC0003DMG400036006
Solanum tuberosum
PGSC0003DMG400036006
N
0.702
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.729
PGSC0003DMG400040127
Solanum tuberosum
PGSC0003DMG400040127
N
0.771
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.750
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.750
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.792
PGSC0003DMG400044513
Solanum tuberosum
PGSC0003DMG400044513
N
0.708
PGSC0003DMG400045239
Solanum tuberosum
PGSC0003DMG400045239
N
0.729
TCM_006323
Theobroma cacao
TCM_006323
N
0.854
TCM_006324
Theobroma cacao
TCM_006324
N
0.729
TCM_040735
Theobroma cacao
TCM_040735
N
0.771
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.792
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.792
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.812
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.833
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.729
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.792
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.729