CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra031049
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra031049
T253348_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.875
0.875
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra031049.1-P
MADS box
10
57
RLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTVF
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo8g068060
Brassica oleracea
Bo8g068060
I
1.000
Bo8g104060
Brassica oleracea
Bo8g104060
I
1.000
Bra016544
Brassica rapa
Bra016544
I
1.000
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.938
Bra025685
Brassica rapa
Bra025685
I
0.917
30138.m004061
Ricinus communis
30138.m004061
I
0.896
AGL65
Arabidopsis thaliana
AT1G18750
D
0.875
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.875
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.875
TCM_014051
Theobroma cacao
TCM_014051
I
0.875
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.875
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.875
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.870
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.854
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.854
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.854
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.854
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.854
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.854
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.854
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.854
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.854
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.854
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.851
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.848
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.833
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.833
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.833
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.833
MDP0000193129
Malus domestica
MDP0000193129
I
0.833
PK21701.1
Cannabis sativa
PK21701.1
I
0.833
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.826
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.812
Pm024895
Prunus mume
Pm024895
I
0.812
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.812
F775_13266
Aegilops tauschii
F775_13266
I
0.804
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.804
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.804
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.804
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.804
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.804
Pm006479
Prunus mume
Pm006479
I
0.804
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.804
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.804
MDP0000146415
Malus domestica
MDP0000146415
I
0.800
MDP0000773068
Malus domestica
MDP0000773068
I
0.800
MDP0000919323
Malus domestica
MDP0000919323
I
0.800
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.792
Cla010361
Citrullus lanatus
Cla010361
I
0.792
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.792
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.792
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.787
29813.m001508
Ricinus communis
29813.m001508
I
0.783
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.771
Cla018884
Citrullus lanatus
Cla018884
I
0.771
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.771
MDP0000147667
Malus domestica
MDP0000147667
I
0.771
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.761
AGL30
Arabidopsis thaliana
AT2G03060
I
0.761
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.761
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.761
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.761
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.761
Si028357m.g
Setaria italica
Si028357m.g
N
0.761
TCM_011687
Theobroma cacao
TCM_011687
I
0.761
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.761
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.761
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.750
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.750
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.750
mgf000945m
Mimulus guttatus
mgf000945m
I
0.750
mgf004425m
Mimulus guttatus
mgf004425m
I
0.750
MDP0000146231
Malus domestica
MDP0000146231
I
0.750
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.739
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.739
Bra004393
Brassica rapa
Bra004393
I
0.739
Bra024792
Brassica rapa
Bra024792
I
0.739
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.739
Ca_16376
Cicer arietinum
Ca_16376
I
0.739
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.739
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.739
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.739
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.739
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.729
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.729
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.729
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.729
Ca_18082
Cicer arietinum
Ca_18082
I
0.729
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.729
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.729
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.729
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.729
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.729
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.729
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.729
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.729
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.729
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.729
PK03147.1
Cannabis sativa
PK03147.1
I
0.729
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.717
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.717
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.717
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.717
Ciclev10010259m.g
Citrus clementina
Ciclev10010259m.g
N
0.717
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.717
OBART11G21780
Oryza barthii
OBART11G21780
N
0.708
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.708
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.708
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.708
OS11G0658700
Oryza sativa
OS11G0658700
N
0.708
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.708
Gorai.010G096200
Gossypium raimondii
Gorai.010G096200
N
0.708
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.702