Bra031888 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra031888 T253352_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.872 0.872
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.872 0.872
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.872 0.872
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.872 0.872
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra031888.1-P MADS box 10 56

Links

Other MADS box family TFs
Other Brassica rapa TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g166500 Brassica oleracea Bo2g166500 I 0.979
Bo3g100570 Brassica oleracea Bo3g100570 I 0.915
Bra024350 Brassica rapa Bra024350 I 0.915
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.915
Bra028599 Brassica rapa Bra028599 I 0.894
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.894
AGL27 Arabidopsis thaliana AT1G77080 D 0.872
FLC Arabidopsis thaliana AT5G10140 D 0.872
AGL31 Arabidopsis thaliana AT5G65050 I 0.872
Bo9g173370 Brassica oleracea Bo9g173370 I 0.872
Bra009055 Brassica rapa Bra009055 I 0.872
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.872
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.872
FLC Arabidopsis lyrata scaffold_601028.1 I 0.872
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.872
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.872
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.872
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.872
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.872
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.872
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.872
Bo13628s010 Brassica oleracea Bo13628s010 I 0.851
Bo9g173400 Brassica oleracea Bo9g173400 I 0.851
Bra006051 Brassica rapa Bra006051 I 0.851
MAF3 Arabidopsis thaliana AT5G65060 I 0.830
Bo3g005470 Brassica oleracea Bo3g005470 I 0.809
Bra024351 Brassica rapa Bra024351 I 0.809
Bra031886 Brassica rapa Bra031886 I 0.809
Bo01054s010 Brassica oleracea Bo01054s010 I 0.787
Bo3g100540 Brassica oleracea Bo3g100540 I 0.787
Bra022771 Brassica rapa Bra022771 I 0.771
MAF5 Arabidopsis thaliana AT5G65080 I 0.766
Bo03856s010 Brassica oleracea Bo03856s010 I 0.766
Bo3g024250 Brassica oleracea Bo3g024250 I 0.766
Bra031884 Brassica rapa Bra031884 I 0.766
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.745
MAF4 Arabidopsis thaliana AT5G65070 I 0.745
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.745
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.745
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.723
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.723
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.723
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.723
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.702
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.702