CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA13G09660
(
Glycine max
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GLYMA13G09660
T254200_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.875
0.875
FBP1_PETHY
M10996_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.854
0.854
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.833
0.833
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA13G09660.1
MADS box
10
57
RIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDY
Links
Other
MADS box
family TFs
Other
Glycine max
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA14G24590
Glycine max
GLYMA14G24590
I
1.000
LjSGA_047687.2
Lotus japonicus
LjSGA_047687.2
I
1.000
Ca_13111
Cicer arietinum
Ca_13111
I
0.979
GLYMA04G42420
Glycine max
GLYMA04G42420
I
0.917
GLYMA06G12380
Glycine max
GLYMA06G12380
I
0.917
MTR_3g088615
Medicago truncatula
MTR_3g088615
I
0.917
Ca_03887
Cicer arietinum
Ca_03887
I
0.917
TCM_035212
Theobroma cacao
TCM_035212
I
0.896
Cla023547
Citrullus lanatus
Cla023547
I
0.896
29648.m001978
Ricinus communis
29648.m001978
I
0.896
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.896
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.896
Ciclev10002471m.g
Citrus clementina
Ciclev10002471m.g
I
0.896
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.896
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
0.896
MTR_1g029670
Medicago truncatula
MTR_1g029670
I
0.875
POPTR_0005s20480
Populus trichocarpa
POPTR_0005s20480
I
0.875
PI
Vitis vinifera
VIT_18s0001g01760
I
0.875
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.875
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.875
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.875
gene11268-v1.0-hybrid
Fragaria vesca
gene11268-v1.0-hybrid
I
0.875
PGSC0003DMG401007392
Solanum tuberosum
PGSC0003DMG401007392
I
0.854
POPTR_0002s07920
Populus trichocarpa
POPTR_0002s07920
I
0.854
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.854
Solyc08g067230.2
Solanum lycopersicum
Solyc08g067230.2
I
0.854
Pm004718
Prunus mume
Pm004718
I
0.854
FBP1_PETHY
Petunia x hybrida
FBP1_PETHY
D
0.854
Ciclev10002422m.g
Citrus clementina
Ciclev10002422m.g
I
0.854
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.854
Lus10029719.g
Linum usitatissimum
Lus10029719.g
I
0.854
Lus10042749.g
Linum usitatissimum
Lus10042749.g
I
0.854
orange1.1g042044m.g
Citrus sinensis
orange1.1g042044m.g
I
0.854
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.833
mgf003143m
Mimulus guttatus
mgf003143m
I
0.833
mgf006158m
Mimulus guttatus
mgf006158m
I
0.833
mgf008207m
Mimulus guttatus
mgf008207m
I
0.833
gene11267-v1.0-hybrid
Fragaria vesca
gene11267-v1.0-hybrid
I
0.833
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.833
SapurV1A.0829s0180
Salix purpurea
SapurV1A.0829s0180
I
0.833
Eucgr.E01006
Eucalyptus grandis
Eucgr.E01006
I
0.812
PI
Arabidopsis thaliana
AT5G20240
D
0.750
Bo3g010390
Brassica oleracea
Bo3g010390
I
0.750
PI
Arabidopsis lyrata
fgenesh2_kg.6__2063__AT5G20240.1
I
0.750
Bostr.26527s0175
Boechera stricta
Bostr.26527s0175
I
0.750
Cagra.0179s0008
Capsella grandiflora
Cagra.0179s0008
I
0.750
Carubv10001962m.g
Capsella rubella
Carubv10001962m.g
I
0.750
Eucgr.E01007
Eucalyptus grandis
Eucgr.E01007
I
0.750
Thhalv10014683m.g
Eutrema salsugineum
Thhalv10014683m.g
I
0.750
Bo2g020730
Brassica oleracea
Bo2g020730
I
0.729
Bo3g014100
Brassica oleracea
Bo3g014100
I
0.729
Bo9g152080
Brassica oleracea
Bo9g152080
I
0.729
Bra002285
Brassica rapa
Bra002285
I
0.729
Bra006549
Brassica rapa
Bra006549
I
0.729
Bra020093
Brassica rapa
Bra020093
I
0.729
GSMUA_Achr6G18670_001
Musa acuminata
GSMUA_Achr6G18670_001
I
0.729
MTR_5g046790
Medicago truncatula
MTR_5g046790
I
0.729
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.729
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.729
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.729
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.729
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.729
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.729
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.720
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.708
GSMUA_Achr3G02280_001
Musa acuminata
GSMUA_Achr3G02280_001
I
0.708
GSMUA_Achr5G01230_001
Musa acuminata
GSMUA_Achr5G01230_001
I
0.708
MLOC_59262
Hordeum vulgare
MLOC_59262
I
0.708
PRUPE_ppa010727mg
Prunus persica
PRUPE_ppa010727mg
I
0.708
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.708
Sb03g041860
Sorghum bicolor
Sb03g041860
I
0.708
TCM_000266
Theobroma cacao
TCM_000266
I
0.708
TRAES3BF021600020CFD_g
Triticum aestivum
TRAES3BF021600020CFD_g
I
0.708
TRIUR3_15782
Triticum urartu
TRIUR3_15782
I
0.708
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.708
Pm006266
Prunus mume
Pm006266
I
0.708
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.708
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.708
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.708
Pm026712
Prunus mume
Pm026712
I
0.702