CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA20G27320
(
Glycine max
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GLYMA20G27320
T254250_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA20G27320.1
MADS box
17
64
KMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSF
Links
Other
MADS box
family TFs
Other
Glycine max
TFs
263 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.979
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.979
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.979
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.979
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.979
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.979
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.979
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.958
Ca_04659
Cicer arietinum
Ca_04659
N
0.958
Ca_04660
Cicer arietinum
Ca_04660
N
0.958
Ca_04665
Cicer arietinum
Ca_04665
N
0.958
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.938
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.938
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.917
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.917
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.917
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.917
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.917
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.917
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.917
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.917
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.917
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.917
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.917
Ca_04662
Cicer arietinum
Ca_04662
N
0.917
Pm021071
Prunus mume
Pm021071
N
0.917
AGL62
Arabidopsis thaliana
AT5G60440
I
0.896
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.896
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.896
Ca_04661
Cicer arietinum
Ca_04661
N
0.896
Cla006571
Citrullus lanatus
Cla006571
N
0.896
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.896
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.896
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.896
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.896
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.896
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.896
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.896
MDP0000434703
Malus domestica
MDP0000434703
I
0.896
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.896
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.896
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.875
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.875
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.875
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.875
30099.m001672
Ricinus communis
30099.m001672
N
0.875
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.875
MDP0000233925
Malus domestica
MDP0000233925
N
0.875
MDP0000278770
Malus domestica
MDP0000278770
N
0.875
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.875
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.875
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.854
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.854
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.854
Bra002480
Brassica rapa
Bra002480
N
0.854
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.854
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.854
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.854
TCM_006323
Theobroma cacao
TCM_006323
N
0.854
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.854
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.854
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.854
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.854
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.854
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.854
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.854
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.854
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.854
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.854
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.854
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.854
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.854
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.854
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.841
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.833
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.833
Bra038225
Brassica rapa
Bra038225
N
0.833
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.833
MTR_0121s0080
Medicago truncatula
MTR_0121s0080
N
0.833
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.833
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.833
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.833
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.833
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.833
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.833
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.833
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.833
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.833
Pm021018
Prunus mume
Pm021018
N
0.833
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.833
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.833
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.833
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.833
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.833
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.833
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.833
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.833
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.833
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.833
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.833
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.833
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.833
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.833
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.833
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.833
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.833
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.833
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.833
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.833
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.833
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.833
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.833
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.833
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.833
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.816
Bra022434
Brassica rapa
Bra022434
N
0.812
MTR_0121s0100
Medicago truncatula
MTR_0121s0100
N
0.812
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.812
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.812
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.812
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.812
MDP0000221590
Malus domestica
MDP0000221590
N
0.812
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.812
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.812
LjSGA_025167.1
Lotus japonicus
LjSGA_025167.1
N
0.812
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.792
AGL28
Arabidopsis thaliana
AT1G01530
N
0.792
GLYMA10G10840
Glycine max
GLYMA10G10840
N
0.792
GLYMA10G10860
Glycine max
GLYMA10G10860
N
0.792
GLYMA10G10930
Glycine max
GLYMA10G10930
N
0.792
TCM_040735
Theobroma cacao
TCM_040735
N
0.792
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.792
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.792
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.792
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.792
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.792
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.792
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.792
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.792
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.792
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.792
evm.TU.contig_37082
Carica papaya
evm.TU.contig_37082
N
0.792
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.792
evm.TU.supercontig_347.10
Carica papaya
evm.TU.supercontig_347.10
N
0.792
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.792
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.792
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.792
evm.TU.supercontig_505.6
Carica papaya
evm.TU.supercontig_505.6
N
0.792
evm.TU.supercontig_54.67
Carica papaya
evm.TU.supercontig_54.67
N
0.792
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.792
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.792
AGL23
Arabidopsis thaliana
AT1G65360
N
0.771
GLYMA10G10640
Glycine max
GLYMA10G10640
N
0.771
GLYMA10G10770
Glycine max
GLYMA10G10770
N
0.771
GLYMA10G10900
Glycine max
GLYMA10G10900
N
0.771
GLYMA10G11450
Glycine max
GLYMA10G11450
N
0.771
MTR_1g075570
Medicago truncatula
MTR_1g075570
N
0.771
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.771
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.771
Pm021017
Prunus mume
Pm021017
N
0.771
Pm021070
Prunus mume
Pm021070
N
0.771
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.771
mgf022790m
Mimulus guttatus
mgf022790m
N
0.771
evm.TU.contig_35157.2
Carica papaya
evm.TU.contig_35157.2
N
0.771
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.771
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.771
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.771
Bra011938
Brassica rapa
Bra011938
N
0.750
GLYMA10G10610
Glycine max
GLYMA10G10610
N
0.750
GLYMA10G10690
Glycine max
GLYMA10G10690
N
0.750
GLYMA10G10920
Glycine max
GLYMA10G10920
N
0.750
MTR_3g067870
Medicago truncatula
MTR_3g067870
N
0.750
MTR_3g067910
Medicago truncatula
MTR_3g067910
N
0.750
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.750
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.750
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.750
29613.m000367
Ricinus communis
29613.m000367
N
0.750
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.750
mgf018529m
Mimulus guttatus
mgf018529m
N
0.750
mgf024307m
Mimulus guttatus
mgf024307m
N
0.750
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.750
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.750
evm.TU.contig_33091.3
Carica papaya
evm.TU.contig_33091.3
N
0.750
evm.TU.contig_37489
Carica papaya
evm.TU.contig_37489
N
0.750
evm.TU.contig_38155.1
Carica papaya
evm.TU.contig_38155.1
N
0.750
evm.TU.contig_38604
Carica papaya
evm.TU.contig_38604
N
0.750
evm.TU.supercontig_348.9
Carica papaya
evm.TU.supercontig_348.9
N
0.750
evm.TU.supercontig_439.1
Carica papaya
evm.TU.supercontig_439.1
N
0.750
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.750
MDP0000168914
Malus domestica
MDP0000168914
N
0.750
Thhalv10000432m.g
Eutrema salsugineum
Thhalv10000432m.g
N
0.750
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.750
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.750
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.750
Bo4g070340
Brassica oleracea
Bo4g070340
N
0.745
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.729
AGL61
Arabidopsis thaliana
AT2G24840
N
0.729
Bo4g165540
Brassica oleracea
Bo4g165540
N
0.729
Bra020247
Brassica rapa
Bra020247
N
0.729
Bra026764
Brassica rapa
Bra026764
N
0.729
GLYMA10G10295
Glycine max
GLYMA10G10295
N
0.729
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.729
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.729
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.729
POPTR_0008s04110
Populus trichocarpa
POPTR_0008s04110
N
0.729
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.729
TCM_006324
Theobroma cacao
TCM_006324
N
0.729
Ca_07607
Cicer arietinum
Ca_07607
N
0.729
Ca_26354
Cicer arietinum
Ca_26354
N
0.729
cassava21573.m1
Manihot esculenta
cassava21573.m1
N
0.729
mgf022147m
Mimulus guttatus
mgf022147m
N
0.729
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.729
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.729
Ciclev10013802m.g
Citrus clementina
Ciclev10013802m.g
N
0.729
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.729
evm.TU.contig_37718
Carica papaya
evm.TU.contig_37718
N
0.729
evm.TU.contig_37906
Carica papaya
evm.TU.contig_37906
N
0.729
evm.TU.supercontig_347.14
Carica papaya
evm.TU.supercontig_347.14
N
0.729
evm.TU.supercontig_695.8
Carica papaya
evm.TU.supercontig_695.8
N
0.729
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.729
Lus10031073.g
Linum usitatissimum
Lus10031073.g
N
0.729
Lus10035456.g
Linum usitatissimum
Lus10035456.g
N
0.729
orange1.1g045481m.g
Citrus sinensis
orange1.1g045481m.g
N
0.729
Thhalv10017754m.g
Eutrema salsugineum
Thhalv10017754m.g
N
0.729
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.729
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.729
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.729
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.729
MTR_1g106070
Medicago truncatula
MTR_1g106070
N
0.726
evm.TU.supercontig_695.6
Carica papaya
evm.TU.supercontig_695.6
N
0.711
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.708
GLYMA02G35080
Glycine max
GLYMA02G35080
N
0.708
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.708
GLYMA17G01771
Glycine max
GLYMA17G01771
N
0.708
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.708
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.708
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.708
POPTR_0017s06710
Populus trichocarpa
POPTR_0017s06710
N
0.708
POPTR_0017s06800
Populus trichocarpa
POPTR_0017s06800
N
0.708
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.708
Pm016629
Prunus mume
Pm016629
N
0.708
27866.m000233
Ricinus communis
27866.m000233
N
0.708
29838.m001672
Ricinus communis
29838.m001672
N
0.708
30099.m001671
Ricinus communis
30099.m001671
N
0.708
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.708
mgf022625m
Mimulus guttatus
mgf022625m
N
0.708
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.708
evm.TU.contig_30005.2
Carica papaya
evm.TU.contig_30005.2
N
0.708
evm.TU.contig_31965.1
Carica papaya
evm.TU.contig_31965.1
N
0.708
evm.TU.contig_35554.1
Carica papaya
evm.TU.contig_35554.1
N
0.708
evm.TU.contig_38802
Carica papaya
evm.TU.contig_38802
N
0.708
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.708
evm.TU.supercontig_348.10
Carica papaya
evm.TU.supercontig_348.10
N
0.708
evm.TU.supercontig_348.1
Carica papaya
evm.TU.supercontig_348.1
N
0.708
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.708
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.708
Thhalv10003315m.g
Eutrema salsugineum
Thhalv10003315m.g
N
0.708
chr1.LjB17A22.60.nc
Lotus japonicus
chr1.LjB17A22.60.nc
N
0.708
chr2.CM0250.170.nc
Lotus japonicus
chr2.CM0250.170.nc
N
0.708
LjSGA_020620.1
Lotus japonicus
LjSGA_020620.1
N
0.708
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.708
LjSGA_082681.2
Lotus japonicus
LjSGA_082681.2
N
0.708
LjSGA_120826.2
Lotus japonicus
LjSGA_120826.2
N
0.708