GSMUA_Achr5G26530_001 (Musa acuminata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GSMUA_Achr5G26530_001 T254392_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr5P26530_001 MADS box 20 67

Links

Other MADS box family TFs
Other Musa acuminata TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.917
F775_04223 Aegilops tauschii F775_04223 I 0.854
F775_43210 Aegilops tauschii F775_43210 I 0.854
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.854
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.854
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.833
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.833
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.833
Si019951m.g Setaria italica Si019951m.g I 0.833
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.833
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.833
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.812
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.812
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.792
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.792
OBART01G45740 Oryza barthii OBART01G45740 N 0.792
OBART09G00850 Oryza barthii OBART09G00850 N 0.792
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.792
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.792
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.792
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.792
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.792
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.792
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.792
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.792
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.792
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.792
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.792
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.792
OS01G0975800 Oryza sativa OS01G0975800 N 0.792
OS09G0116800 Oryza sativa OS09G0116800 N 0.792
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.792
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.792
BRADI4G39420 Brachypodium distachyon BRADI4G39420 N 0.771
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.771
OB01G55160 Oryza brachyantha OB01G55160 N 0.771
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.750
BRADI2G26320 Brachypodium distachyon BRADI2G26320 N 0.750
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.750
GSMUA_Achr8G09250_001 Musa acuminata GSMUA_Achr8G09250_001 I 0.750
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.750
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.750
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.750
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.750
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.750
Sb01g049020 Sorghum bicolor Sb01g049020 I 0.750
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.750
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.750
Si038960m.g Setaria italica Si038960m.g N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.729
Bo6g108600 Brassica oleracea Bo6g108600 I 0.729
Bra004361 Brassica rapa Bra004361 I 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.729
BRADI1G20090 Brachypodium distachyon BRADI1G20090 N 0.729
F775_00385 Aegilops tauschii F775_00385 I 0.729
F775_23542 Aegilops tauschii F775_23542 N 0.729
F775_23758 Aegilops tauschii F775_23758 I 0.729
GLYMA18G45761 Glycine max GLYMA18G45761 I 0.729
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.729
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.729
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.729
LPERR08G18330 Leersia perrieri LPERR08G18330 I 0.729
OB06G21580 Oryza brachyantha OB06G21580 N 0.729
OBART06G13310 Oryza barthii OBART06G13310 N 0.729
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.729
OMERI02G05750 Oryza meridionalis OMERI02G05750 N 0.729
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.729
OPUNC02G04080 Oryza punctata OPUNC02G04080 N 0.729
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.729
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.729
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.729
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.729
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.729
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
Si038257m.g Setaria italica Si038257m.g I 0.729
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I 0.729
Pm022002 Prunus mume Pm022002 I 0.729
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
Traes_7AS_F568FCBF1 Triticum aestivum Traes_7AS_F568FCBF1 I 0.717
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.708
AP1 Arabidopsis thaliana AT1G69120 D 0.708
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.708
Bo3g009340 Brassica oleracea Bo3g009340 I 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bo6g095760 Brassica oleracea Bo6g095760 I 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bo9g093920 Brassica oleracea Bo9g093920 I 0.708
Bra004007 Brassica rapa Bra004007 I 0.708
Bra006214 Brassica rapa Bra006214 I 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
Bra029424 Brassica rapa Bra029424 I 0.708
Bra038326 Brassica rapa Bra038326 I 0.708
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.708
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
F775_08627 Aegilops tauschii F775_08627 I 0.708
F775_26069 Aegilops tauschii F775_26069 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
AP1 Arabidopsis lyrata fgenesh2_kg.2__1169__AT1G69120.1 I 0.708
GLYMA09G40251 Glycine max GLYMA09G40251 I 0.708
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.708
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.708
MLOC_76418 Hordeum vulgare MLOC_76418 I 0.708
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OB08G28340 Oryza brachyantha OB08G28340 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OBART03G06320 Oryza barthii OBART03G06320 I 0.708
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.708
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.708
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.708
OPUNC08G18260 Oryza punctata OPUNC08G18260 I 0.708
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.708
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
OS03G0186600 Oryza sativa OS03G0186600 I 0.708
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.708
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.708
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.708
Sb02g006710 Sorghum bicolor Sb02g006710 N 0.708
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.708
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.708
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.708
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.708
Si014540m.g Setaria italica Si014540m.g I 0.708
Si032189m.g Setaria italica Si032189m.g N 0.708
Si037358m.g Setaria italica Si037358m.g I 0.708
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
TCM_007378 Theobroma cacao TCM_007378 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
TRAES3BF009000010CFD_g Triticum aestivum TRAES3BF009000010CFD_g I 0.708
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.708
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.708
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.708
TRIUR3_28473 Triticum urartu TRIUR3_28473 I 0.708
TRIUR3_30872 Triticum urartu TRIUR3_30872 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.708
VIT_02s0025g04650 Vitis vinifera VIT_02s0025g04650 I 0.708
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.708
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.708
Ca_16423 Cicer arietinum Ca_16423 I 0.708
29693.m002042 Ricinus communis 29693.m002042 N 0.708
gw1.81.151.1 Physcomitrella patens gw1.81.151.1 N 0.708
gw1.88.220.1 Physcomitrella patens gw1.88.220.1 N 0.708
mgf006616m Mimulus guttatus mgf006616m I 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Bostr.10273s0459 Boechera stricta Bostr.10273s0459 I 0.708
Cagra.1157s0032 Capsella grandiflora Cagra.1157s0032 I 0.708
Cagra.5588s0006 Capsella grandiflora Cagra.5588s0006 I 0.708
Carubv10002596m.g Capsella rubella Carubv10002596m.g I 0.708
Carubv10022005m.g Capsella rubella Carubv10022005m.g I 0.708
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
Gorai.005G221300 Gossypium raimondii Gorai.005G221300 I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.708
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.708
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.708
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.708
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.708
Thhalv10019025m.g Eutrema salsugineum Thhalv10019025m.g I 0.708
PDK_20s1363011g003 Phoenix dactylifera PDK_20s1363011g003 N 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707