CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM01G13490
(
Oryza glumaepatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
OGLUM01G13490
T255017_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM01G13490.1
MADS box
10
58
RIANDATRRATFKKRRRGLVKKASELSTLCDVDACLVVYGEGDAEPEVW
Links
Other
MADS box
family TFs
Other
Oryza glumaepatula
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART01G12050
Oryza barthii
OBART01G12050
N
1.000
ORGLA01G0101700
Oryza glaberrima
ORGLA01G0101700
N
1.000
OPUNC01G11730
Oryza punctata
OPUNC01G11730
N
0.979
BGIOSGA003304
Oryza indica
BGIOSGA003304
N
0.958
ONIVA01G14280
Oryza nivara
ONIVA01G14280
N
0.958
ORUFI01G13020
Oryza rufipogon
ORUFI01G13020
N
0.958
OB01G21750
Oryza brachyantha
OB01G21750
N
0.894
GRMZM5G853066
Zea mays
GRMZM5G853066
N
0.812
GRMZM5G839969
Zea mays
GRMZM5G839969
N
0.778
Pavir.Ib03850
Panicum virgatum
Pavir.Ib03850
N
0.771
Si019470m.g
Setaria italica
Si019470m.g
N
0.762
Pavir.J14267
Panicum virgatum
Pavir.J14267
N
0.761
GSMUA_Achr3G08500_001
Musa acuminata
GSMUA_Achr3G08500_001
N
0.733
OB03G33030
Oryza brachyantha
OB03G33030
N
0.729
LPERR02G10380
Leersia perrieri
LPERR02G10380
N
0.711
GSMUA_AchrUn_randomG17230_001
Musa acuminata
GSMUA_AchrUn_randomG17230_001
N
0.708