CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400038207
(
Solanum tuberosum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
PGSC0003DMG400038207
T255685_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.702
0.702
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.702
0.702
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400088636
MADS box
14
60
RVQNSRNRQVTFSKRRNGLFKKASELSTLCGAYVAVVIFSSRNKIYS
Links
Other
MADS box
family TFs
Other
Solanum tuberosum
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400043978
Solanum tuberosum
PGSC0003DMG400043978
N
0.979
PGSC0003DMG400043595
Solanum tuberosum
PGSC0003DMG400043595
N
0.783
PGSC0003DMG400006290
Solanum tuberosum
PGSC0003DMG400006290
N
0.745
OGLUM06G17310
Oryza glumaepatula
OGLUM06G17310
N
0.729
OMERI06G17150
Oryza meridionalis
OMERI06G17150
N
0.729
ONIVA06G15740
Oryza nivara
ONIVA06G15740
N
0.729
ORGLA06G0135200
Oryza glaberrima
ORGLA06G0135200
N
0.729
ORUFI06G17170
Oryza rufipogon
ORUFI06G17170
N
0.729
OS06G0504100
Oryza sativa
OS06G0504100
N
0.729
PGSC0003DMG400036190
Solanum tuberosum
PGSC0003DMG400036190
N
0.723
PGSC0003DMG400046733
Solanum tuberosum
PGSC0003DMG400046733
N
0.723
Solyc01g060310.1
Solanum lycopersicum
Solyc01g060310.1
N
0.723
GLYMA10G38580
Glycine max
GLYMA10G38580
I
0.702
PGSC0003DMG400046706
Solanum tuberosum
PGSC0003DMG400046706
N
0.702
Solyc01g060300.1
Solanum lycopersicum
Solyc01g060300.1
N
0.702
Eucgr.B00633
Eucalyptus grandis
Eucgr.B00633
I
0.702