CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PGSC0003DMG400041956
(
Solanum tuberosum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
PGSC0003DMG400041956
T255711_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400092385
MADS box
15
60
NQNQTNLQVTFSKRRAGLFKKASELSTLGGANIAIVAFPPSNKEYA
Links
Other
MADS box
family TFs
Other
Solanum tuberosum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400006290
Solanum tuberosum
PGSC0003DMG400006290
N
0.891
Solyc01g060310.1
Solanum lycopersicum
Solyc01g060310.1
N
0.870
Solyc01g060300.1
Solanum lycopersicum
Solyc01g060300.1
N
0.851
PGSC0003DMG400046706
Solanum tuberosum
PGSC0003DMG400046706
N
0.783
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.739
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.717
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.708