CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s07920
(
Populus trichocarpa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
POPTR_0002s07920
T255803_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.875
0.875
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.854
0.854
FBP1_PETHY
M10996_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.833
0.833
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.708
0.708
MADS2
M10966_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s07920.1
MADS box
10
57
RIENSSNRQVTYSKRRSGIIKKAKEITVLCDAQVSLVIFASSGRMHEY
Links
Other
MADS box
family TFs
Other
Populus trichocarpa
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0829s0180
Salix purpurea
SapurV1A.0829s0180
I
0.979
Cla023547
Citrullus lanatus
Cla023547
I
0.958
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.958
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.958
POPTR_0005s20480
Populus trichocarpa
POPTR_0005s20480
I
0.938
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.917
PI
Vitis vinifera
VIT_18s0001g01760
I
0.917
Pm004718
Prunus mume
Pm004718
I
0.917
29648.m001978
Ricinus communis
29648.m001978
I
0.917
TCM_035212
Theobroma cacao
TCM_035212
I
0.896
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.896
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.896
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.875
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.875
GLYMA13G09660
Glycine max
GLYMA13G09660
I
0.854
GLYMA14G24590
Glycine max
GLYMA14G24590
I
0.854
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.854
gene11268-v1.0-hybrid
Fragaria vesca
gene11268-v1.0-hybrid
I
0.854
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.854
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.854
LjSGA_047687.2
Lotus japonicus
LjSGA_047687.2
I
0.854
GLYMA04G42420
Glycine max
GLYMA04G42420
I
0.833
GLYMA06G12380
Glycine max
GLYMA06G12380
I
0.833
MTR_1g029670
Medicago truncatula
MTR_1g029670
I
0.833
Ca_13111
Cicer arietinum
Ca_13111
I
0.833
FBP1_PETHY
Petunia x hybrida
FBP1_PETHY
D
0.833
mgf003143m
Mimulus guttatus
mgf003143m
I
0.833
mgf006158m
Mimulus guttatus
mgf006158m
I
0.833
mgf008207m
Mimulus guttatus
mgf008207m
I
0.833
Ciclev10002471m.g
Citrus clementina
Ciclev10002471m.g
I
0.833
Eucgr.E01006
Eucalyptus grandis
Eucgr.E01006
I
0.833
gene11267-v1.0-hybrid
Fragaria vesca
gene11267-v1.0-hybrid
I
0.833
Lus10029719.g
Linum usitatissimum
Lus10029719.g
I
0.833
Lus10042749.g
Linum usitatissimum
Lus10042749.g
I
0.833
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
0.833
MTR_3g088615
Medicago truncatula
MTR_3g088615
I
0.812
PGSC0003DMG401007392
Solanum tuberosum
PGSC0003DMG401007392
I
0.812
Solyc08g067230.2
Solanum lycopersicum
Solyc08g067230.2
I
0.812
Ca_03887
Cicer arietinum
Ca_03887
I
0.812
Ciclev10002422m.g
Citrus clementina
Ciclev10002422m.g
I
0.812
orange1.1g042044m.g
Citrus sinensis
orange1.1g042044m.g
I
0.812
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.800
GSMUA_Achr5G01230_001
Musa acuminata
GSMUA_Achr5G01230_001
I
0.771
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.750
Eucgr.E01007
Eucalyptus grandis
Eucgr.E01007
I
0.750
GSMUA_Achr6G18670_001
Musa acuminata
GSMUA_Achr6G18670_001
I
0.729
Aquca_006_00072
Aquilegia coerulea
Aquca_006_00072
I
0.729
AMTR_s00089p00081270
Amborella trichopoda
AMTR_s00089p00081270
I
0.708
PI
Arabidopsis thaliana
AT5G20240
D
0.708
BGIOSGA000377
Oryza indica
BGIOSGA000377
I
0.708
Bo3g010390
Brassica oleracea
Bo3g010390
I
0.708
Bo7g098190
Brassica oleracea
Bo7g098190
I
0.708
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.708
PI
Arabidopsis lyrata
fgenesh2_kg.6__2063__AT5G20240.1
I
0.708
LPERR01G34040
Leersia perrieri
LPERR01G34040
I
0.708
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.708
OB01G48280
Oryza brachyantha
OB01G48280
I
0.708
OBART01G39540
Oryza barthii
OBART01G39540
I
0.708
OGLUM01G43760
Oryza glumaepatula
OGLUM01G43760
I
0.708
OLONG_003010
Oryza longistaminata
OLONG_003010
I
0.708
OMERI01G36400
Oryza meridionalis
OMERI01G36400
I
0.708
ONIVA01G44390
Oryza nivara
ONIVA01G44390
I
0.708
OPUNC01G38250
Oryza punctata
OPUNC01G38250
I
0.708
ORGLA01G0334300
Oryza glaberrima
ORGLA01G0334300
I
0.708
ORUFI05G05970
Oryza rufipogon
ORUFI05G05970
I
0.708
MADS2
Oryza sativa
OS01G0883100
D
0.708
TCM_000266
Theobroma cacao
TCM_000266
I
0.708
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.708
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.708
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.708
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.708
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.708
Pm006266
Prunus mume
Pm006266
I
0.708
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.708
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.708
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.708
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.708
Aquca_014_00308
Aquilegia coerulea
Aquca_014_00308
I
0.708
Bostr.26527s0175
Boechera stricta
Bostr.26527s0175
I
0.708
Cagra.0179s0008
Capsella grandiflora
Cagra.0179s0008
I
0.708
Carubv10001962m.g
Capsella rubella
Carubv10001962m.g
I
0.708
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.708
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.708
Thhalv10014683m.g
Eutrema salsugineum
Thhalv10014683m.g
I
0.708