POPTR_0002s07920 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0002s07920 T255803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.875 0.875
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.854 0.854
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.833 0.833
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s07920.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PI Arabidopsis thaliana AT5G20240 D 0.708
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.833
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.875
MADS2 Oryza sativa OS01G0883100 D 0.708
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.875
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.708
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.708
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
mgf008207m Mimulus guttatus mgf008207m I 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.958
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.708
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.708
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.708
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.708
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.958
29648.m001978 Ricinus communis 29648.m001978 I 0.917
Pm006266 Prunus mume Pm006266 I 0.708
Pm004718 Prunus mume Pm004718 I 0.917
Cla023547 Citrullus lanatus Cla023547 I 0.958
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.896
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.854
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.708
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.979
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.812
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.833
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.708
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.833
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.833
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.854
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.854
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.833
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.896
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.750
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.833
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.833
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.812
Ca_03887 Cicer arietinum Ca_03887 I 0.812
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.854
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.708
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.708
OBART01G39540 Oryza barthii OBART01G39540 I 0.708
OB01G48280 Oryza brachyantha OB01G48280 I 0.708
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.812
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.833
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.708
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.771
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.708
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.854
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.833
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.833
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
Bo7g098190 Brassica oleracea Bo7g098190 I 0.708
Bo3g010390 Brassica oleracea Bo3g010390 I 0.708
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.708
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.750
AP3 Vitis vinifera VIT_18s0001g13460 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.917
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.708
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.708
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.708
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.708
TCM_035212 Theobroma cacao TCM_035212 I 0.896
Ca_13111 Cicer arietinum Ca_13111 I 0.833
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.812
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.854
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.917
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.938
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.812
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.708
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.708
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.708
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.708