POPTR_0005s20480 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0005s20480 T255828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.854 0.854
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.833 0.833
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.812 0.812
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s20480.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.938
Cla023547 Citrullus lanatus Cla023547 I 0.938
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.938
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.938
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.917
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.896
PI Vitis vinifera VIT_18s0001g01760 I 0.896
Pm004718 Prunus mume Pm004718 I 0.896
29648.m001978 Ricinus communis 29648.m001978 I 0.896
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.896
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.875
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.875
TCM_035212 Theobroma cacao TCM_035212 I 0.875
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.875
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.875
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.875
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.854
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.854
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.854
Ca_13111 Cicer arietinum Ca_13111 I 0.854
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.854
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.854
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.854
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.833
Ca_03887 Cicer arietinum Ca_03887 I 0.833
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.833
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.833
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.833
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.833
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.833
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.812
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.812
mgf003143m Mimulus guttatus mgf003143m I 0.812
mgf006158m Mimulus guttatus mgf006158m I 0.812
mgf008207m Mimulus guttatus mgf008207m I 0.812
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.812
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.812
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.812
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.812
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.792
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.792
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.750
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.750
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.729
PI Arabidopsis thaliana AT5G20240 D 0.729
Bo3g010390 Brassica oleracea Bo3g010390 I 0.729
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.729
Pm006266 Prunus mume Pm006266 I 0.729
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.729
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.729
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.729
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.729
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.729
Bo2g020730 Brassica oleracea Bo2g020730 I 0.708
Bo3g014100 Brassica oleracea Bo3g014100 I 0.708
Bra006549 Brassica rapa Bra006549 I 0.708
Bra020093 Brassica rapa Bra020093 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.708
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.708