POPTR_0016s12640 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0016s12640 T255874_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s12640.1 MADS box 29 75

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.957
SapurV1A.0175s0180 Salix purpurea SapurV1A.0175s0180 N 0.936
SapurV1A.0175s0160 Salix purpurea SapurV1A.0175s0160 N 0.915
SapurV1A.0175s0190 Salix purpurea SapurV1A.0175s0190 N 0.915
cassava44772.m1 Manihot esculenta cassava44772.m1 N 0.809
cassava27922.m1 Manihot esculenta cassava27922.m1 N 0.787
Lus10003940.g Linum usitatissimum Lus10003940.g N 0.745
Lus10015726.g Linum usitatissimum Lus10015726.g N 0.745
Lus10037450.g Linum usitatissimum Lus10037450.g N 0.745
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.723
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.723
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.723
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.723
Lus10003481.g Linum usitatissimum Lus10003481.g N 0.723
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.723
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.702
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.702
Pm021071 Prunus mume Pm021071 N 0.702
28348.m000077 Ricinus communis 28348.m000077 N 0.702
30099.m001672 Ricinus communis 30099.m001672 N 0.702
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.702
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.702
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.702
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.702
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.702
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.702
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.702
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.702
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.702
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.702
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.702
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.702
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.702