Solyc04g025050.1 (Solanum lycopersicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Solyc04g025050.1 T256333_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g025050.1.1 MADS box 1 47

Links

Other MADS box family TFs
Other Solanum lycopersicum TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.787
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.766
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.766
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.766
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.750
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.750
TCM_006323 Theobroma cacao TCM_006323 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.745
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.729
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.723
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.723
Bra022434 Brassica rapa Bra022434 N 0.723
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.723
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.723
Pm021071 Prunus mume Pm021071 N 0.723
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.723
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.723
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.723
Bra002480 Brassica rapa Bra002480 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.708
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.708
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.702
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.702