Solyc04g047870.1 (Solanum lycopersicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Solyc04g047870.1 T256336_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g047870.1.1 MADS box 16 63

Links

Other MADS box family TFs
Other Solanum lycopersicum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.875
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.833
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.792
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.771
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
TCM_006323 Theobroma cacao TCM_006323 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.708
Solyc04g025110.1 Solanum lycopersicum Solyc04g025110.1 N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708