CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_2DL_71F120931
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_2DL_71F120931
T256537_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.833
0.833
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.771
0.771
Q40882_PETHY
M11003_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP11_01
0.729
0.729
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729
0.729
MLOC_61901
M10964_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.708
0.708
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.708
0.708
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.708
0.708
Q43616_PETHY
M11004_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP7_01
0.708
0.708
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.708
0.708
Q9FR84_MAIZE
M10981_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.708
0.708
Q41829_MAIZE
M10977_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_2DL_71F120931.1
MADS box
10
57
RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVMVFSPHGKVYEL
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
226 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_05799
Aegilops tauschii
F775_05799
I
1.000
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
1.000
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
1.000
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.967
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.958
OBART04G13770
Oryza barthii
OBART04G13770
I
0.958
OBART04G13800
Oryza barthii
OBART04G13800
I
0.958
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.958
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.958
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.958
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.958
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.958
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.958
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.957
OB04G21020
Oryza brachyantha
OB04G21020
I
0.957
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.947
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.938
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.938
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.938
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.933
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.915
Si012632m.g
Setaria italica
Si012632m.g
I
0.915
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.915
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.896
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.894
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.875
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.875
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.875
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.875
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.875
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.872
Bra016128
Brassica rapa
Bra016128
I
0.854
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.854
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.854
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.854
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.854
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.854
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.854
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.854
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.854
TCM_036568
Theobroma cacao
TCM_036568
I
0.854
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.854
Ca_19954
Cicer arietinum
Ca_19954
I
0.854
Cla012709
Citrullus lanatus
Cla012709
I
0.854
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.854
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.854
mgf017448m
Mimulus guttatus
mgf017448m
I
0.854
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.854
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.854
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.854
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.854
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.854
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.854
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.851
Bra003919
Brassica rapa
Bra003919
I
0.851
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.851
AGL12
Arabidopsis thaliana
AT1G71692
D
0.833
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.833
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.833
Bra007972
Brassica rapa
Bra007972
I
0.833
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.833
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.833
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.833
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.833
MDP0000192806
Malus domestica
MDP0000192806
I
0.833
MDP0000193953
Malus domestica
MDP0000193953
I
0.833
MDP0000316609
Malus domestica
MDP0000316609
I
0.833
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.833
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.833
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.830
F775_26271
Aegilops tauschii
F775_26271
I
0.830
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.830
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.830
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.830
OB08G11080
Oryza brachyantha
OB08G11080
I
0.830
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.830
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.830
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.830
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.830
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.830
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.830
Pm004239
Prunus mume
Pm004239
I
0.830
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.830
PK26896.1
Cannabis sativa
PK26896.1
I
0.830
29907.m000663
Ricinus communis
29907.m000663
I
0.812
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.812
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.812
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.792
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.792
Si014419m.g
Setaria italica
Si014419m.g
I
0.792
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.792
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.787
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.787
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
0.771
OBART08G00930
Oryza barthii
OBART08G00930
I
0.771
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
0.771
OLONG_011815
Oryza longistaminata
OLONG_011815
I
0.771
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
0.771
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
0.771
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
0.771
MADS26
Oryza sativa
OS08G0112700
D
0.771
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.750
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.750
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.743
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.729
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.729
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.729
GRMZM2G026223
Zea mays
GRMZM2G026223
I
0.729
GRMZM2G070034
Zea mays
GRMZM2G070034
I
0.729
GRMZM2G171365
Zea mays
GRMZM2G171365
I
0.729
GSMUA_Achr11G21460_001
Musa acuminata
GSMUA_Achr11G21460_001
I
0.729
GSMUA_Achr2G04340_001
Musa acuminata
GSMUA_Achr2G04340_001
I
0.729
GSMUA_Achr5G20280_001
Musa acuminata
GSMUA_Achr5G20280_001
I
0.729
LPERR03G01640
Leersia perrieri
LPERR03G01640
I
0.729
OB03G11760
Oryza brachyantha
OB03G11760
I
0.729
OBART03G01800
Oryza barthii
OBART03G01800
I
0.729
OBART04G25610
Oryza barthii
OBART04G25610
I
0.729
OGLUM03G01750
Oryza glumaepatula
OGLUM03G01750
I
0.729
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.729
OLONG_010918
Oryza longistaminata
OLONG_010918
I
0.729
OMERI03G01730
Oryza meridionalis
OMERI03G01730
I
0.729
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.729
ONIVA03G01420
Oryza nivara
ONIVA03G01420
I
0.729
OPUNC03G01630
Oryza punctata
OPUNC03G01630
I
0.729
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.729
ORGLA03G0015400
Oryza glaberrima
ORGLA03G0015400
I
0.729
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.729
ORUFI03G01510
Oryza rufipogon
ORUFI03G01510
I
0.729
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.729
MADS50
Oryza sativa
OS03G0122600
D
0.729
MADS31
Oryza sativa
OS04G0614100
I
0.729
POPTR_0002s15310
Populus trichocarpa
POPTR_0002s15310
I
0.729
Sb01g030570
Sorghum bicolor
Sb01g030570
I
0.729
Sb08g006430
Sorghum bicolor
Sb08g006430
I
0.729
Si024640m.g
Setaria italica
Si024640m.g
I
0.729
Si038257m.g
Setaria italica
Si038257m.g
I
0.729
Si038299m.g
Setaria italica
Si038299m.g
I
0.729
Q40882_PETHY
Petunia x hybrida
Q40882_PETHY
D
0.729
cassava3099.m1
Manihot esculenta
cassava3099.m1
I
0.729
Aquca_013_00471
Aquilegia coerulea
Aquca_013_00471
I
0.729
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.729
Pavir.J10823
Panicum virgatum
Pavir.J10823
I
0.729
Pavir.J22336
Panicum virgatum
Pavir.J22336
I
0.729
SapurV1A.0024s0570
Salix purpurea
SapurV1A.0024s0570
I
0.729
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.722
AMTR_s00071p00193200
Amborella trichopoda
AMTR_s00071p00193200
I
0.708
MADS56
Oryza indica
BGIOSGA033356
I
0.708
BRADI1G59250
Brachypodium distachyon
BRADI1G59250
I
0.708
BRADI2G25090
Brachypodium distachyon
BRADI2G25090
I
0.708
BRADI2G57000
Brachypodium distachyon
BRADI2G57000
I
0.708
F775_08627
Aegilops tauschii
F775_08627
I
0.708
F775_52406
Aegilops tauschii
F775_52406
I
0.708
GLYMA08G06991
Glycine max
GLYMA08G06991
I
0.708
GRMZM2G072582
Zea mays
GRMZM2G072582
I
0.708
GRMZM2G148693
Zea mays
GRMZM2G148693
I
0.708
GSMUA_Achr10G10990_001
Musa acuminata
GSMUA_Achr10G10990_001
I
0.708
GSMUA_Achr10G21480_001
Musa acuminata
GSMUA_Achr10G21480_001
I
0.708
GSMUA_Achr11G19540_001
Musa acuminata
GSMUA_Achr11G19540_001
I
0.708
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.708
GSMUA_Achr3G25280_001
Musa acuminata
GSMUA_Achr3G25280_001
I
0.708
GSMUA_Achr7G23690_001
Musa acuminata
GSMUA_Achr7G23690_001
I
0.708
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.708
LPERR07G00480
Leersia perrieri
LPERR07G00480
I
0.708
LPERR07G18670
Leersia perrieri
LPERR07G18670
I
0.708
LPERR10G12950
Leersia perrieri
LPERR10G12950
I
0.708
MLOC_61901
Hordeum vulgare
MLOC_61901
D
0.708
OB10G24040
Oryza brachyantha
OB10G24040
I
0.708
OBART10G16960
Oryza barthii
OBART10G16960
I
0.708
OGLUM10G16960
Oryza glumaepatula
OGLUM10G16960
I
0.708
OLONG_017665
Oryza longistaminata
OLONG_017665
I
0.708
OLONG_021245
Oryza longistaminata
OLONG_021245
I
0.708
OMERI10G13430
Oryza meridionalis
OMERI10G13430
I
0.708
ONIVA10G18680
Oryza nivara
ONIVA10G18680
I
0.708
OPUNC08G19670
Oryza punctata
OPUNC08G19670
I
0.708
ORGLA10G0119200
Oryza glaberrima
ORGLA10G0119200
I
0.708
ORGLA12G0056500
Oryza glaberrima
ORGLA12G0056500
I
0.708
ORUFI10G17990
Oryza rufipogon
ORUFI10G17990
I
0.708
MADS56
Oryza sativa
OS10G0536100
I
0.708
PGSC0003DMG400000008
Solanum tuberosum
PGSC0003DMG400000008
I
0.708
PGSC0003DMG400005176
Solanum tuberosum
PGSC0003DMG400005176
I
0.708
PGSC0003DMG400022748
Solanum tuberosum
PGSC0003DMG400022748
I
0.708
PGSC0003DMG400025525
Solanum tuberosum
PGSC0003DMG400025525
I
0.708
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.708
POPTR_0014s07020
Populus trichocarpa
POPTR_0014s07020
I
0.708
Q41829_MAIZE
Zea mays
Q41829_MAIZE
D
0.708
Q9FR84_MAIZE
Zea mays
Q9FR84_MAIZE
D
0.708
Sb02g001090
Sorghum bicolor
Sb02g001090
I
0.708
Si007187m.g
Setaria italica
Si007187m.g
I
0.708
Si030802m.g
Setaria italica
Si030802m.g
I
0.708
Solyc08g080100.2
Solanum lycopersicum
Solyc08g080100.2
I
0.708
Solyc11g028020.1
Solanum lycopersicum
Solyc11g028020.1
I
0.708
TCM_015049
Theobroma cacao
TCM_015049
I
0.708
Traes_2AL_20C2D79E1
Triticum aestivum
Traes_2AL_20C2D79E1
I
0.708
Traes_2BL_26F24E716
Triticum aestivum
Traes_2BL_26F24E716
I
0.708
Traes_2DL_903A29CBA
Triticum aestivum
Traes_2DL_903A29CBA
I
0.708
Traes_4DL_5633C0561
Triticum aestivum
Traes_4DL_5633C0561
I
0.708
TRIUR3_21876
Triticum urartu
TRIUR3_21876
I
0.708
AGL18
Vitis vinifera
VIT_08s0007g08790
I
0.708
STK
Vitis vinifera
VIT_18s0041g01880
I
0.708
Ca_16423
Cicer arietinum
Ca_16423
I
0.708
Q40591_TOBAC
Nicotiana tabacum
Q40591_TOBAC
D
0.708
Q43616_PETHY
Petunia x hybrida
Q43616_PETHY
D
0.708
Q9ATE8_PETHY
Petunia x hybrida
Q9ATE8_PETHY
D
0.708
Q9ATE9_PETHY
Petunia x hybrida
Q9ATE9_PETHY
D
0.708
cassava38700.m1
Manihot esculenta
cassava38700.m1
I
0.708
cassava40221.m1
Manihot esculenta
cassava40221.m1
I
0.708
mgf005317m
Mimulus guttatus
mgf005317m
I
0.708
mgf006616m
Mimulus guttatus
mgf006616m
I
0.708
mgf008635m
Mimulus guttatus
mgf008635m
I
0.708
mgf009713m
Mimulus guttatus
mgf009713m
I
0.708
mgf011060m
Mimulus guttatus
mgf011060m
I
0.708
Aquca_035_00266
Aquilegia coerulea
Aquca_035_00266
I
0.708
Ciclev10016427m.g
Citrus clementina
Ciclev10016427m.g
I
0.708
evm.TU.supercontig_3.196
Carica papaya
evm.TU.supercontig_3.196
I
0.708
Lus10002763.g
Linum usitatissimum
Lus10002763.g
I
0.708
Lus10036543.g
Linum usitatissimum
Lus10036543.g
I
0.708
MDP0000135652
Malus domestica
MDP0000135652
I
0.708
MDP0000144516
Malus domestica
MDP0000144516
I
0.708
Pavir.Ba03990
Panicum virgatum
Pavir.Ba03990
I
0.708
Pavir.Bb00065
Panicum virgatum
Pavir.Bb00065
I
0.708
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.708
SapurV1A.0578s0130
Salix purpurea
SapurV1A.0578s0130
I
0.708
PK19764.1
Cannabis sativa
PK19764.1
I
0.708
Traes_5BS_A19FD8E34
Triticum aestivum
Traes_5BS_A19FD8E34
I
0.705