CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_4BL_B8FFB0854
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_4BL_B8FFB0854
T256559_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_4BL_B8FFB0854.2
MADS box
11
58
RIEDRTSRQVRFSKRRSGLFKKAFEFGLLYDAEVALLVFSPAGRLYEY
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
237 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_00385
Aegilops tauschii
F775_00385
I
0.875
F775_08627
Aegilops tauschii
F775_08627
I
0.750
F775_10590
Aegilops tauschii
F775_10590
I
0.812
F775_23758
Aegilops tauschii
F775_23758
I
0.875
F775_25597
Aegilops tauschii
F775_25597
I
0.729
F775_29801
Aegilops tauschii
F775_29801
I
0.750
F775_30822
Aegilops tauschii
F775_30822
I
0.708
F775_43625
Aegilops tauschii
F775_43625
I
0.958
AMTR_s00001p00266470
Amborella trichopoda
AMTR_s00001p00266470
I
0.708
Aquca_013_00471
Aquilegia coerulea
Aquca_013_00471
I
0.708
AGL14
Arabidopsis lyrata
fgenesh2_kg.6__3138__AT4G11880.1
I
0.708
AGL14
Arabidopsis thaliana
AT4G11880
I
0.708
Bostr.15774s0334
Boechera stricta
Bostr.15774s0334
I
0.708
Bostr.25463s0138
Boechera stricta
Bostr.25463s0138
I
0.708
BRADI1G77020
Brachypodium distachyon
BRADI1G77020
I
0.708
BRADI2G59120
Brachypodium distachyon
BRADI2G59120
I
0.917
BRADI2G59187
Brachypodium distachyon
BRADI2G59187
I
0.896
BRADI3G00730
Brachypodium distachyon
BRADI3G00730
I
0.812
BRADI3G32090
Brachypodium distachyon
BRADI3G32090
I
0.750
BRADI3G41297
Brachypodium distachyon
BRADI3G41297
I
0.833
BRADI4G40350
Brachypodium distachyon
BRADI4G40350
I
0.708
Bo4g108190
Brassica oleracea
Bo4g108190
I
0.708
Bo9g093920
Brassica oleracea
Bo9g093920
I
0.708
Bra014552
Brassica rapa
Bra014552
I
0.708
Bra029424
Brassica rapa
Bra029424
I
0.708
PK19764.1
Cannabis sativa
PK19764.1
I
0.729
Cagra.7242s0001
Capsella grandiflora
Cagra.7242s0001
I
0.708
Carubv10001906m.g
Capsella rubella
Carubv10001906m.g
I
0.708
Carubv10027093m.g
Capsella rubella
Carubv10027093m.g
I
0.729
Ca_16423
Cicer arietinum
Ca_16423
I
0.729
Cla011687
Citrullus lanatus
Cla011687
I
0.708
Ciclev10023160m.g
Citrus clementina
Ciclev10023160m.g
I
0.708
orange1.1g028363m.g
Citrus sinensis
orange1.1g028363m.g
I
0.708
Cucsa.302640
Cucumis sativus
Cucsa.302640
I
0.708
Eucgr.C01942
Eucalyptus grandis
Eucgr.C01942
I
0.708
Eucgr.D01939
Eucalyptus grandis
Eucgr.D01939
I
0.708
Eucgr.D02425
Eucalyptus grandis
Eucgr.D02425
I
0.708
Thhalv10028949m.g
Eutrema salsugineum
Thhalv10028949m.g
I
0.708
gene19425-v1.0-hybrid
Fragaria vesca
gene19425-v1.0-hybrid
I
0.729
GLYMA05G03660
Glycine max
GLYMA05G03660
I
0.708
GLYMA05G29595
Glycine max
GLYMA05G29595
I
0.708
GLYMA07G08831
Glycine max
GLYMA07G08831
I
0.708
GLYMA08G12730
Glycine max
GLYMA08G12730
I
0.708
GLYMA09G40230
Glycine max
GLYMA09G40230
I
0.708
GLYMA10G38541
Glycine max
GLYMA10G38541
I
0.708
GLYMA18G45780
Glycine max
GLYMA18G45780
I
0.708
GLYMA20G29300
Glycine max
GLYMA20G29300
I
0.708
MLOC_12290
Hordeum vulgare
MLOC_12290
I
0.917
MLOC_57890
Hordeum vulgare
MLOC_57890
I
0.708
MLOC_76418
Hordeum vulgare
MLOC_76418
I
0.854
LPERR01G36730
Leersia perrieri
LPERR01G36730
I
0.854
LPERR02G00370
Leersia perrieri
LPERR02G00370
I
0.792
LPERR03G01640
Leersia perrieri
LPERR03G01640
I
0.750
LPERR06G00470
Leersia perrieri
LPERR06G00470
I
0.708
LPERR08G12860
Leersia perrieri
LPERR08G12860
I
0.708
LPERR08G18330
Leersia perrieri
LPERR08G18330
I
0.854
LPERR10G12950
Leersia perrieri
LPERR10G12950
I
0.750
LPERR12G05240
Leersia perrieri
LPERR12G05240
I
0.708
Lus10006715.g
Linum usitatissimum
Lus10006715.g
I
0.708
Lus10006716.g
Linum usitatissimum
Lus10006716.g
I
0.708
Lus10014143.g
Linum usitatissimum
Lus10014143.g
I
0.708
Lus10014144.g
Linum usitatissimum
Lus10014144.g
I
0.708
Lus10036543.g
Linum usitatissimum
Lus10036543.g
I
0.750
MDP0000314765
Malus domestica
MDP0000314765
I
0.708
cassava28648.m1
Manihot esculenta
cassava28648.m1
I
0.708
cassava30125.valid.m1
Manihot esculenta
cassava30125.valid.m1
I
0.708
cassava723.valid.m1
Manihot esculenta
cassava723.valid.m1
I
0.708
MTR_7g075870
Medicago truncatula
MTR_7g075870
I
0.708
MTR_8g033220
Medicago truncatula
MTR_8g033220
I
0.750
mgf007062m
Mimulus guttatus
mgf007062m
I
0.708
mgf021705m
Mimulus guttatus
mgf021705m
I
0.708
GSMUA_Achr11G15560_001
Musa acuminata
GSMUA_Achr11G15560_001
I
0.833
GSMUA_Achr5G20280_001
Musa acuminata
GSMUA_Achr5G20280_001
I
0.708
GSMUA_Achr8G09250_001
Musa acuminata
GSMUA_Achr8G09250_001
I
0.771
GSMUA_AchrUn_randomG20290_001
Musa acuminata
GSMUA_AchrUn_randomG20290_001
I
0.854
OBART01G42170
Oryza barthii
OBART01G42170
I
0.854
OBART02G00360
Oryza barthii
OBART02G00360
I
0.771
OBART03G01800
Oryza barthii
OBART03G01800
I
0.729
OBART06G14060
Oryza barthii
OBART06G14060
I
0.708
OBART08G21560
Oryza barthii
OBART08G21560
I
0.854
OBART10G16960
Oryza barthii
OBART10G16960
I
0.750
OBART12G05940
Oryza barthii
OBART12G05940
I
0.708
OB03G11760
Oryza brachyantha
OB03G11760
I
0.729
OB06G10570
Oryza brachyantha
OB06G10570
I
0.708
OB06G22200
Oryza brachyantha
OB06G22200
I
0.729
OB08G28340
Oryza brachyantha
OB08G28340
I
0.854
OB10G24040
Oryza brachyantha
OB10G24040
I
0.750
OB12G15620
Oryza brachyantha
OB12G15620
I
0.708
ORGLA01G0361900
Oryza glaberrima
ORGLA01G0361900
I
0.854
ORGLA02G0003200
Oryza glaberrima
ORGLA02G0003200
I
0.771
ORGLA03G0015400
Oryza glaberrima
ORGLA03G0015400
I
0.729
ORGLA06G0125600
Oryza glaberrima
ORGLA06G0125600
I
0.708
ORGLA08G0229900
Oryza glaberrima
ORGLA08G0229900
I
0.854
ORGLA10G0119200
Oryza glaberrima
ORGLA10G0119200
I
0.750
OGLUM01G46440
Oryza glumaepatula
OGLUM01G46440
I
0.854
OGLUM02G00350
Oryza glumaepatula
OGLUM02G00350
I
0.771
OGLUM03G01750
Oryza glumaepatula
OGLUM03G01750
I
0.729
OGLUM06G15040
Oryza glumaepatula
OGLUM06G15040
I
0.708
OGLUM08G16360
Oryza glumaepatula
OGLUM08G16360
I
0.708
OGLUM08G22840
Oryza glumaepatula
OGLUM08G22840
I
0.854
OGLUM10G16960
Oryza glumaepatula
OGLUM10G16960
I
0.750
OGLUM12G07150
Oryza glumaepatula
OGLUM12G07150
I
0.708
BGIOSGA005076
Oryza indica
BGIOSGA005076
I
0.854
BGIOSGA007333
Oryza indica
BGIOSGA007333
I
0.771
BGIOSGA007336
Oryza indica
BGIOSGA007336
I
0.771
BGIOSGA018621
Oryza indica
BGIOSGA018621
I
0.708
BGIOSGA022872
Oryza indica
BGIOSGA022872
I
0.708
BGIOSGA026939
Oryza indica
BGIOSGA026939
I
0.708
BGIOSGA029053
Oryza indica
BGIOSGA029053
I
0.854
MADS56
Oryza indica
BGIOSGA033356
I
0.750
OLONG_001786
Oryza longistaminata
OLONG_001786
I
0.771
OLONG_006914
Oryza longistaminata
OLONG_006914
I
0.708
OLONG_010918
Oryza longistaminata
OLONG_010918
I
0.729
OLONG_011763
Oryza longistaminata
OLONG_011763
I
0.708
OLONG_017665
Oryza longistaminata
OLONG_017665
I
0.750
OLONG_018231
Oryza longistaminata
OLONG_018231
I
0.708
OMERI01G39210
Oryza meridionalis
OMERI01G39210
I
0.854
OMERI02G09250
Oryza meridionalis
OMERI02G09250
I
0.771
OMERI03G01730
Oryza meridionalis
OMERI03G01730
I
0.729
OMERI06G13650
Oryza meridionalis
OMERI06G13650
I
0.854
OMERI06G15180
Oryza meridionalis
OMERI06G15180
I
0.708
OMERI10G13430
Oryza meridionalis
OMERI10G13430
I
0.750
OMERI12G04040
Oryza meridionalis
OMERI12G04040
I
0.708
ONIVA01G48250
Oryza nivara
ONIVA01G48250
I
0.854
ONIVA02G00370
Oryza nivara
ONIVA02G00370
I
0.771
ONIVA03G01420
Oryza nivara
ONIVA03G01420
I
0.729
ONIVA06G16870
Oryza nivara
ONIVA06G16870
I
0.708
ONIVA08G16700
Oryza nivara
ONIVA08G16700
I
0.708
ONIVA08G24570
Oryza nivara
ONIVA08G24570
I
0.854
ONIVA10G18680
Oryza nivara
ONIVA10G18680
I
0.750
ONIVA12G05640
Oryza nivara
ONIVA12G05640
I
0.708
OPUNC01G41110
Oryza punctata
OPUNC01G41110
I
0.854
OPUNC02G00040
Oryza punctata
OPUNC02G00040
I
0.792
OPUNC03G01630
Oryza punctata
OPUNC03G01630
I
0.729
OPUNC06G00450
Oryza punctata
OPUNC06G00450
I
0.708
OPUNC06G13170
Oryza punctata
OPUNC06G13170
I
0.708
OPUNC08G13690
Oryza punctata
OPUNC08G13690
I
0.708
OPUNC08G18260
Oryza punctata
OPUNC08G18260
I
0.833
OPUNC08G19670
Oryza punctata
OPUNC08G19670
I
0.812
OPUNC10G15300
Oryza punctata
OPUNC10G15300
I
0.750
OPUNC12G05660
Oryza punctata
OPUNC12G05660
I
0.708
ORUFI01G45590
Oryza rufipogon
ORUFI01G45590
I
0.812
ORUFI02G00390
Oryza rufipogon
ORUFI02G00390
I
0.771
ORUFI03G01510
Oryza rufipogon
ORUFI03G01510
I
0.729
ORUFI05G07100
Oryza rufipogon
ORUFI05G07100
I
0.708
ORUFI06G14980
Oryza rufipogon
ORUFI06G14980
I
0.708
ORUFI08G24040
Oryza rufipogon
ORUFI08G24040
I
0.854
ORUFI10G17990
Oryza rufipogon
ORUFI10G17990
I
0.750
ORUFI12G06810
Oryza rufipogon
ORUFI12G06810
I
0.708
MADS51
Oryza sativa
OS01G0922800
I
0.812
OS02G0104100
Oryza sativa
OS02G0104100
I
0.771
MADS50
Oryza sativa
OS03G0122600
D
0.729
OS05G0203800
Oryza sativa
OS05G0203800
I
0.708
OS06G0347700
Oryza sativa
OS06G0347700
I
0.708
OS08G0531900
Oryza sativa
OS08G0531900
I
0.854
MADS56
Oryza sativa
OS10G0536100
I
0.750
MADS13
Oryza sativa
OS12G0207000
I
0.708
Pavir.Aa03568
Panicum virgatum
Pavir.Aa03568
I
0.708
Pavir.Ab00058
Panicum virgatum
Pavir.Ab00058
I
0.708
Pavir.Bb00005
Panicum virgatum
Pavir.Bb00005
I
0.781
Pavir.Cb01898
Panicum virgatum
Pavir.Cb01898
I
0.708
Pavir.Ea01147
Panicum virgatum
Pavir.Ea01147
I
0.708
Pavir.Fa00163
Panicum virgatum
Pavir.Fa00163
I
0.771
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.702
Pavir.Ia04538
Panicum virgatum
Pavir.Ia04538
I
0.729
Pavir.Ib00012
Panicum virgatum
Pavir.Ib00012
I
0.708
Pavir.J02739
Panicum virgatum
Pavir.J02739
I
0.875
Pavir.J08622
Panicum virgatum
Pavir.J08622
I
0.851
Pavir.J19662
Panicum virgatum
Pavir.J19662
I
0.766
Pavir.J22336
Panicum virgatum
Pavir.J22336
I
0.708
Pavir.J26790
Panicum virgatum
Pavir.J26790
I
0.833
POPTR_0001s08510
Populus trichocarpa
POPTR_0001s08510
I
0.708
POPTR_0002s15310
Populus trichocarpa
POPTR_0002s15310
I
0.708
POPTR_0004s06310
Populus trichocarpa
POPTR_0004s06310
I
0.708
POPTR_0014s07020
Populus trichocarpa
POPTR_0014s07020
I
0.729
Pm018089
Prunus mume
Pm018089
I
0.729
PRUPE_ppa014428mg
Prunus persica
PRUPE_ppa014428mg
I
0.729
SapurV1A.0024s0570
Salix purpurea
SapurV1A.0024s0570
I
0.708
SapurV1A.0029s0080
Salix purpurea
SapurV1A.0029s0080
I
0.708
SapurV1A.0045s0580
Salix purpurea
SapurV1A.0045s0580
I
0.708
SapurV1A.0282s0240
Salix purpurea
SapurV1A.0282s0240
I
0.708
SapurV1A.0578s0130
Salix purpurea
SapurV1A.0578s0130
I
0.729
Si004582m.g
Setaria italica
Si004582m.g
I
0.875
Si005133m.g
Setaria italica
Si005133m.g
I
0.792
Si007683m.g
Setaria italica
Si007683m.g
I
0.750
Si008672m.g
Setaria italica
Si008672m.g
I
0.708
Si014540m.g
Setaria italica
Si014540m.g
I
0.812
Si015525m.g
Setaria italica
Si015525m.g
I
0.812
Si019985m.g
Setaria italica
Si019985m.g
I
0.750
Si022981m.g
Setaria italica
Si022981m.g
I
0.708
Si038257m.g
Setaria italica
Si038257m.g
I
0.729
Si038299m.g
Setaria italica
Si038299m.g
I
0.708
Solyc08g080100.2
Solanum lycopersicum
Solyc08g080100.2
I
0.750
PGSC0003DMG400022748
Solanum tuberosum
PGSC0003DMG400022748
I
0.750
Sb01g049020
Sorghum bicolor
Sb01g049020
I
0.708
Sb03g006210
Sorghum bicolor
Sb03g006210
I
0.896
Sb03g044170
Sorghum bicolor
Sb03g044170
I
0.833
Sb04g000500
Sorghum bicolor
Sb04g000500
I
0.750
Sb07g026180
Sorghum bicolor
Sb07g026180
I
0.833
Sb08g006460
Sorghum bicolor
Sb08g006460
I
0.708
TCM_005456
Theobroma cacao
TCM_005456
I
0.708
TCM_016147
Theobroma cacao
TCM_016147
I
0.708
Traes_1AL_6B108514B
Triticum aestivum
Traes_1AL_6B108514B
I
0.750
Traes_1AL_6F5982F88
Triticum aestivum
Traes_1AL_6F5982F88
I
0.708
Traes_1AS_3232D5589
Triticum aestivum
Traes_1AS_3232D5589
I
0.708
Traes_1BL_F1D5BF5F8
Triticum aestivum
Traes_1BL_F1D5BF5F8
I
0.750
Traes_1DL_D5BBCA2D0
Triticum aestivum
Traes_1DL_D5BBCA2D0
I
0.729
TRAES3BF009000010CFD_g
Triticum aestivum
TRAES3BF009000010CFD_g
I
0.875
TRAES3BF009000040CFD_g
Triticum aestivum
TRAES3BF009000040CFD_g
I
0.896
Traes_4DL_5633C0561
Triticum aestivum
Traes_4DL_5633C0561
I
0.750
Traes_5AS_7BFB385EF
Triticum aestivum
Traes_5AS_7BFB385EF
I
0.708
Traes_5DS_16243E52C
Triticum aestivum
Traes_5DS_16243E52C
I
0.708
Traes_6AS_D6ABA1D79
Triticum aestivum
Traes_6AS_D6ABA1D79
I
0.833
Traes_6DS_2BAD7A60A
Triticum aestivum
Traes_6DS_2BAD7A60A
I
0.833
Traes_7AS_F568FCBF1
Triticum aestivum
Traes_7AS_F568FCBF1
I
0.870
Traes_7BS_4D5DE99CC
Triticum aestivum
Traes_7BS_4D5DE99CC
I
0.800
Traes_7DS_4DF7EB08F
Triticum aestivum
Traes_7DS_4DF7EB08F
I
0.875
TRIUR3_18962
Triticum urartu
TRIUR3_18962
I
0.729
TRIUR3_19056
Triticum urartu
TRIUR3_19056
I
0.958
TRIUR3_20985
Triticum urartu
TRIUR3_20985
I
0.854
TRIUR3_21732
Triticum urartu
TRIUR3_21732
I
0.860
TRIUR3_22964
Triticum urartu
TRIUR3_22964
I
0.708
TRIUR3_27077
Triticum urartu
TRIUR3_27077
I
0.833
TRIUR3_28215
Triticum urartu
TRIUR3_28215
I
0.708
TRIUR3_28473
Triticum urartu
TRIUR3_28473
I
0.875
TRIUR3_30073
Triticum urartu
TRIUR3_30073
I
0.854
TRIUR3_30872
Triticum urartu
TRIUR3_30872
I
0.896
TRIUR3_32699
Triticum urartu
TRIUR3_32699
I
0.750
VIT_15s0048g01240
Vitis vinifera
VIT_15s0048g01240
I
0.729
GRMZM2G010669
Zea mays
GRMZM2G010669
I
0.708
GRMZM2G026223
Zea mays
GRMZM2G026223
I
0.708
GRMZM2G070034
Zea mays
GRMZM2G070034
I
0.708
GRMZM2G098986
Zea mays
GRMZM2G098986
I
0.812
GRMZM2G160687
Zea mays
GRMZM2G160687
I
0.708
GRMZM2G171365
Zea mays
GRMZM2G171365
I
0.729
GRMZM2G171650
Zea mays
GRMZM2G171650
I
0.833
GRMZM2G320549
Zea mays
GRMZM2G320549
I
0.875