GOA (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_02s0025g02350 T256772_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.854 0.854
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.708 0.708
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_02s0025g02350.t01 MADS box 10 57

Links

Other MADS box family TFs
Other Vitis vinifera TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.854
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.854
TT16 Vitis vinifera VIT_10s0042g00820 I 0.833
30221.m002218 Ricinus communis 30221.m002218 I 0.833
cassava5692.m1 Manihot esculenta cassava5692.m1 I 0.833
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.833
Gorai.013G069000 Gossypium raimondii Gorai.013G069000 I 0.833
XM_002310609.1 Populus trichocarpa POPTR_0007s07620 I 0.812
TCM_007713 Theobroma cacao TCM_007713 I 0.812
cassava9889.m1 Manihot esculenta cassava9889.m1 I 0.812
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.812
gene20015-v1.0-hybrid Fragaria vesca gene20015-v1.0-hybrid I 0.812
MDP0000128016 Malus domestica MDP0000128016 I 0.812
MDP0000278738 Malus domestica MDP0000278738 I 0.812
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.812
MTR_1g038300 Medicago truncatula MTR_1g038300 I 0.792
POPTR_0005s09340 Populus trichocarpa POPTR_0005s09340 I 0.792
PRUPE_ppa014844mg Prunus persica PRUPE_ppa014844mg I 0.792
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.792
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.792
Pm010767 Prunus mume Pm010767 I 0.792
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.792
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.792
MDP0000181583 Malus domestica MDP0000181583 I 0.792
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.792
SapurV1A.0333s0300 Salix purpurea SapurV1A.0333s0300 I 0.792
SapurV1A.4660s0010 Salix purpurea SapurV1A.4660s0010 I 0.792
GLYMA09G42061 Glycine max GLYMA09G42061 I 0.771
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.771
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.771
TT16 Vitis vinifera VIT_01s0011g01560 I 0.771
Ca_22438 Cicer arietinum Ca_22438 I 0.771
Cla010047 Citrullus lanatus Cla010047 I 0.771
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.771
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.750
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.750
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
Bo7g097810 Brassica oleracea Bo7g097810 I 0.750
Bo9g014270 Brassica oleracea Bo9g014270 I 0.750
Bra013028 Brassica rapa Bra013028 I 0.750
Bra026507 Brassica rapa Bra026507 I 0.750
GLYMA20G00401 Glycine max GLYMA20G00401 I 0.750
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.750
OB04G32080 Oryza brachyantha OB04G32080 I 0.750
TCM_015674 Theobroma cacao TCM_015674 I 0.750
mgf008634m Mimulus guttatus mgf008634m I 0.750
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.750
MDP0000233948 Malus domestica MDP0000233948 I 0.750
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.729
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
OBART04G25610 Oryza barthii OBART04G25610 I 0.729
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.729
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.729
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.729
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.729
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.729
MADS31 Oryza sativa OS04G0614100 I 0.729
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.729
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.729
Ca_01491 Cicer arietinum Ca_01491 I 0.729
Pm002166 Prunus mume Pm002166 I 0.729
squamosa Antirrhinum majus CAA45228.1 D 0.729
Q38742_ANTMA Antirrhinum majus Q38742_ANTMA D 0.729
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.729
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.729
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.729
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
Ciclev10016394m.g Citrus clementina Ciclev10016394m.g I 0.729
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.729
evm.TU.supercontig_30.148 Carica papaya evm.TU.supercontig_30.148 I 0.729
MDP0000013331 Malus domestica MDP0000013331 I 0.729
MDP0000209705 Malus domestica MDP0000209705 I 0.729
O82695_MALDO Malus domestica O82695_MALDO D 0.729
orange1.1g040075m.g Citrus sinensis orange1.1g040075m.g I 0.729
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.729
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.729
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.729
Thhalv10008576m.g Eutrema salsugineum Thhalv10008576m.g I 0.729
PK20651.1 Cannabis sativa PK20651.1 I 0.729
AGL8_SOLLC Solanum lycopersicum AGL8_SOLLC I 0.708
TT16 Arabidopsis thaliana AT5G23260 I 0.708
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.708
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.708
TT16 Arabidopsis lyrata fgenesh2_kg.6__2319__AT5G23260.2 I 0.708
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.708
GLYMA02G13420 Glycine max GLYMA02G13420 I 0.708
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.708
GLYMA09G27461 Glycine max GLYMA09G27461 I 0.708
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.708
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.708
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
MTR_2g461710 Medicago truncatula MTR_2g461710 I 0.708
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.708
OB02G14670 Oryza brachyantha OB02G14670 I 0.708
OBART02G05380 Oryza barthii OBART02G05380 I 0.708
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.708
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.708
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.708
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.708
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.708
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.708
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.708
MADS29 Oryza sativa OS02G0170300 I 0.708
PGSC0003DMG400004081 Solanum tuberosum PGSC0003DMG400004081 I 0.708
PGSC0003DMG400024625 Solanum tuberosum PGSC0003DMG400024625 I 0.708
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.708
PRUPE_ppa010249mg Prunus persica PRUPE_ppa010249mg I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.708
Solyc03g114830.2 Solanum lycopersicum Solyc03g114830.2 I 0.708
Solyc06g069430.2 Solanum lycopersicum Solyc06g069430.2 I 0.708
TCM_011475 Theobroma cacao TCM_011475 I 0.708
TCM_034501 Theobroma cacao TCM_034501 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.708
Ca_12381 Cicer arietinum Ca_12381 I 0.708
Ca_21060 Cicer arietinum Ca_21060 I 0.708
Cla014322 Citrullus lanatus Cla014322 I 0.708
Pm015397 Prunus mume Pm015397 I 0.708
Pm030594 Prunus mume Pm030594 I 0.708
Q8GT99_TOBAC Nicotiana tabacum Q8GT99_TOBAC D 0.708
Q9SBQ1_PETHY Petunia x hybrida Q9SBQ1_PETHY D 0.708
30138.m003939 Ricinus communis 30138.m003939 I 0.708
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.708
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.708
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.708
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.708
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.708
fgenesh1_pg.scaffold_267000029 Physcomitrella patens fgenesh1_pg.scaffold_267000029 I 0.708
mgf007109m Mimulus guttatus mgf007109m I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.708
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.708
evm.TU.supercontig_3486.1 Carica papaya evm.TU.supercontig_3486.1 I 0.708
gene04562-v1.0-hybrid Fragaria vesca gene04562-v1.0-hybrid I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.708
Lus10005081.g Linum usitatissimum Lus10005081.g I 0.708
Lus10034370.g Linum usitatissimum Lus10034370.g I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Pavir.Gb00526 Panicum virgatum Pavir.Gb00526 I 0.708
Pavir.Ia00530 Panicum virgatum Pavir.Ia00530 I 0.708
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.708
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.708
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.708