GOA (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_02s0025g02350 T256772_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.854 0.854
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.708 0.708
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_02s0025g02350.t01 MADS box 10 57

Links

Other MADS box family TFs
Other Vitis vinifera TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M17_MAIZE Zea mays M17_MAIZE D 0.708
squamosa Antirrhinum majus CAA45228.1 D 0.729
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.854
Q38742_ANTMA Antirrhinum majus Q38742_ANTMA D 0.729
Q8GT99_TOBAC Nicotiana tabacum Q8GT99_TOBAC D 0.708
Q9SBQ1_PETHY Petunia x hybrida Q9SBQ1_PETHY D 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.729
AGL8_SOLLC Solanum lycopersicum AGL8_SOLLC I 0.708
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.750
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.750
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.729
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
TT16 Arabidopsis thaliana AT5G23260 I 0.708
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.708
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.729
Bo7g097810 Brassica oleracea Bo7g097810 I 0.750
Bo9g014270 Brassica oleracea Bo9g014270 I 0.750
Bra013028 Brassica rapa Bra013028 I 0.750
Bra026507 Brassica rapa Bra026507 I 0.750
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.708
TT16 Arabidopsis lyrata fgenesh2_kg.6__2319__AT5G23260.2 I 0.708
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.708
GLYMA02G13420 Glycine max GLYMA02G13420 I 0.708
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.708
GLYMA09G27461 Glycine max GLYMA09G27461 I 0.708
GLYMA09G42061 Glycine max GLYMA09G42061 I 0.771
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.708
GLYMA20G00401 Glycine max GLYMA20G00401 I 0.750
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.750
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.708
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.708
MTR_1g038300 Medicago truncatula MTR_1g038300 I 0.792
MTR_2g461710 Medicago truncatula MTR_2g461710 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.708
OB02G14670 Oryza brachyantha OB02G14670 I 0.708
OB04G32080 Oryza brachyantha OB04G32080 I 0.750
OBART02G05380 Oryza barthii OBART02G05380 I 0.708
OBART04G25610 Oryza barthii OBART04G25610 I 0.729
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.708
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.729
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.708
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.708
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.729
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.708
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.708
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.729
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.708
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.729
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.708
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.729
MADS29 Oryza sativa OS02G0170300 I 0.708
MADS31 Oryza sativa OS04G0614100 I 0.729
PGSC0003DMG400004081 Solanum tuberosum PGSC0003DMG400004081 I 0.708
PGSC0003DMG400024625 Solanum tuberosum PGSC0003DMG400024625 I 0.708
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.708
POPTR_0005s09340 Populus trichocarpa POPTR_0005s09340 I 0.792
XM_002310609.1 Populus trichocarpa POPTR_0007s07620 I 0.812
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.729
PRUPE_ppa010249mg Prunus persica PRUPE_ppa010249mg I 0.708
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.729
PRUPE_ppa014844mg Prunus persica PRUPE_ppa014844mg I 0.792
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.792
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.792
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.771
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.771
Si018183m.g Setaria italica Si018183m.g I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.708
Solyc03g114830.2 Solanum lycopersicum Solyc03g114830.2 I 0.708
Solyc06g069430.2 Solanum lycopersicum Solyc06g069430.2 I 0.708
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.854
TCM_007713 Theobroma cacao TCM_007713 I 0.812
TCM_011475 Theobroma cacao TCM_011475 I 0.708
TCM_015674 Theobroma cacao TCM_015674 I 0.750
TCM_034501 Theobroma cacao TCM_034501 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.771
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
TT16 Vitis vinifera VIT_10s0042g00820 I 0.833
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.708
Ca_01491 Cicer arietinum Ca_01491 I 0.729
Ca_12381 Cicer arietinum Ca_12381 I 0.708
Ca_21060 Cicer arietinum Ca_21060 I 0.708
Ca_22438 Cicer arietinum Ca_22438 I 0.771
Cla010047 Citrullus lanatus Cla010047 I 0.771
Cla014322 Citrullus lanatus Cla014322 I 0.708
Pm002166 Prunus mume Pm002166 I 0.729
Pm010767 Prunus mume Pm010767 I 0.792
Pm015397 Prunus mume Pm015397 I 0.708
Pm030594 Prunus mume Pm030594 I 0.708
30138.m003939 Ricinus communis 30138.m003939 I 0.708
30221.m002218 Ricinus communis 30221.m002218 I 0.833
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.708
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.708
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.708
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.708
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
cassava5692.m1 Manihot esculenta cassava5692.m1 I 0.833
cassava9889.m1 Manihot esculenta cassava9889.m1 I 0.812
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.729
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
fgenesh1_pg.scaffold_267000029 Physcomitrella patens fgenesh1_pg.scaffold_267000029 I 0.708
mgf007109m Mimulus guttatus mgf007109m I 0.708
mgf008634m Mimulus guttatus mgf008634m I 0.750
mgf023192m Mimulus guttatus mgf023192m I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.729
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.729
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.708
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
Ciclev10016394m.g Citrus clementina Ciclev10016394m.g I 0.729
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.812
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.729
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.708
evm.TU.supercontig_30.148 Carica papaya evm.TU.supercontig_30.148 I 0.729
evm.TU.supercontig_3486.1 Carica papaya evm.TU.supercontig_3486.1 I 0.708
gene04562-v1.0-hybrid Fragaria vesca gene04562-v1.0-hybrid I 0.708
gene20015-v1.0-hybrid Fragaria vesca gene20015-v1.0-hybrid I 0.812
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.750
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.833
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.708
Gorai.013G069000 Gossypium raimondii Gorai.013G069000 I 0.833
Lus10005081.g Linum usitatissimum Lus10005081.g I 0.708
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.792
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.792
Lus10034370.g Linum usitatissimum Lus10034370.g I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.729
MDP0000128016 Malus domestica MDP0000128016 I 0.812
MDP0000181583 Malus domestica MDP0000181583 I 0.792
MDP0000209705 Malus domestica MDP0000209705 I 0.729
MDP0000233948 Malus domestica MDP0000233948 I 0.750
MDP0000278738 Malus domestica MDP0000278738 I 0.812
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.812
orange1.1g040075m.g Citrus sinensis orange1.1g040075m.g I 0.729
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Pavir.Gb00526 Panicum virgatum Pavir.Gb00526 I 0.708
Pavir.Ia00530 Panicum virgatum Pavir.Ia00530 I 0.708
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.792
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.729
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.729
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.729
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.708
SapurV1A.0333s0300 Salix purpurea SapurV1A.0333s0300 I 0.792
SapurV1A.4660s0010 Salix purpurea SapurV1A.4660s0010 I 0.792
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.771
Thhalv10008576m.g Eutrema salsugineum Thhalv10008576m.g I 0.729
PK20651.1 Cannabis sativa PK20651.1 I 0.729
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.708
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.708