29838.m001672 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 29838.m001672 T257149_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29838.m001672 MADS box 16 63

Links

Other MADS box family TFs
Other Ricinus communis TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.854
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.854
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.833
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.771
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.771
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.771
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.771
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.771
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.771
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.750
29613.m000367 Ricinus communis 29613.m000367 N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.750
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.750
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.750
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.750
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.750
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.750
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.750
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.750
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.750
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.750
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.750
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.750
MDP0000233925 Malus domestica MDP0000233925 N 0.750
MDP0000278770 Malus domestica MDP0000278770 N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
TCM_006323 Theobroma cacao TCM_006323 N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.729
Ca_04660 Cicer arietinum Ca_04660 N 0.729
Pm021070 Prunus mume Pm021070 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.729
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.729
MDP0000434703 Malus domestica MDP0000434703 I 0.729
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
Bo1g112460 Brassica oleracea Bo1g112460 N 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bra022434 Brassica rapa Bra022434 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.708
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
Pm021018 Prunus mume Pm021018 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702