CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
30199.m000879
(
Ricinus communis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
30199.m000879
T257166_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.851
0.851
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30199.m000879
MADS box
10
57
YISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEV
Links
Other
MADS box
family TFs
Other
Ricinus communis
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.723
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.745
Al_scaffold_0003_569
Arabidopsis lyrata
Al_scaffold_0003_569
I
0.723
AGL80
Arabidopsis thaliana
AT5G48670
D
0.833
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.745
Bostr.2570s0082
Boechera stricta
Bostr.2570s0082
I
0.833
Bo2g104810
Brassica oleracea
Bo2g104810
I
0.766
Bo9g078450
Brassica oleracea
Bo9g078450
I
0.787
Bra018490
Brassica rapa
Bra018490
I
0.787
Bra029469
Brassica rapa
Bra029469
I
0.787
Bra041022
Brassica rapa
Bra041022
I
0.711
Cagra.1772s0003
Capsella grandiflora
Cagra.1772s0003
I
0.771
Carubv10014232m.g
Capsella rubella
Carubv10014232m.g
I
0.771
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.745
evm.TU.contig_24864.1
Carica papaya
evm.TU.contig_24864.1
N
0.723
evm.TU.contig_25049.1
Carica papaya
evm.TU.contig_25049.1
I
0.800
evm.TU.contig_25049.2
Carica papaya
evm.TU.contig_25049.2
N
0.702
evm.TU.contig_25049.5
Carica papaya
evm.TU.contig_25049.5
I
0.809
evm.TU.contig_25253.2
Carica papaya
evm.TU.contig_25253.2
N
0.723
evm.TU.contig_25982.2
Carica papaya
evm.TU.contig_25982.2
I
0.778
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.787
evm.TU.contig_26058.2
Carica papaya
evm.TU.contig_26058.2
I
0.723
evm.TU.contig_28448.1
Carica papaya
evm.TU.contig_28448.1
N
0.702
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.830
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.745
evm.TU.contig_32899.1
Carica papaya
evm.TU.contig_32899.1
I
0.765
evm.TU.contig_33457.2
Carica papaya
evm.TU.contig_33457.2
I
0.778
evm.TU.contig_35009
Carica papaya
evm.TU.contig_35009
I
0.702
evm.TU.contig_35762
Carica papaya
evm.TU.contig_35762
N
0.702
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.723
evm.TU.contig_36543
Carica papaya
evm.TU.contig_36543
I
0.702
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.702
evm.TU.contig_40008
Carica papaya
evm.TU.contig_40008
I
0.759
evm.TU.contig_40164
Carica papaya
evm.TU.contig_40164
N
0.702
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.773
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.787
evm.TU.contig_44957
Carica papaya
evm.TU.contig_44957
I
0.745
evm.TU.supercontig_117.18
Carica papaya
evm.TU.supercontig_117.18
I
0.787
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.766
evm.TU.supercontig_118.30
Carica papaya
evm.TU.supercontig_118.30
I
0.766
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.787
evm.TU.supercontig_135.5
Carica papaya
evm.TU.supercontig_135.5
N
0.702
evm.TU.supercontig_139.40
Carica papaya
evm.TU.supercontig_139.40
I
0.750
evm.TU.supercontig_1750.2
Carica papaya
evm.TU.supercontig_1750.2
I
0.809
evm.TU.supercontig_185.11
Carica papaya
evm.TU.supercontig_185.11
I
0.778
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.745
evm.TU.supercontig_185.6
Carica papaya
evm.TU.supercontig_185.6
N
0.731
evm.TU.supercontig_185.8
Carica papaya
evm.TU.supercontig_185.8
N
0.723
evm.TU.supercontig_185.9
Carica papaya
evm.TU.supercontig_185.9
I
0.778
evm.TU.supercontig_265.1
Carica papaya
evm.TU.supercontig_265.1
I
0.809
evm.TU.supercontig_265.3
Carica papaya
evm.TU.supercontig_265.3
N
0.702
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.723
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.702
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.787
evm.TU.supercontig_358.1
Carica papaya
evm.TU.supercontig_358.1
N
0.702
Ca_06495
Cicer arietinum
Ca_06495
I
0.766
Ca_13275
Cicer arietinum
Ca_13275
I
0.851
Cla005226
Citrullus lanatus
Cla005226
I
0.822
Cla009163
Citrullus lanatus
Cla009163
I
0.723
Ciclev10006519m.g
Citrus clementina
Ciclev10006519m.g
I
0.875
Ciclev10013728m.g
Citrus clementina
Ciclev10013728m.g
I
0.875
Ciclev10024463m.g
Citrus clementina
Ciclev10024463m.g
I
0.848
orange1.1g040642m.g
Citrus sinensis
orange1.1g040642m.g
I
0.848
Cucsa.050930
Cucumis sativus
Cucsa.050930
I
0.787
Eucgr.E01733
Eucalyptus grandis
Eucgr.E01733
I
0.787
Eucgr.E01734
Eucalyptus grandis
Eucgr.E01734
I
0.826
Eucgr.E01736
Eucalyptus grandis
Eucgr.E01736
I
0.787
Eucgr.E01737
Eucalyptus grandis
Eucgr.E01737
I
0.848
Thhalv10002352m.g
Eutrema salsugineum
Thhalv10002352m.g
I
0.705
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.723
Thhalv10022373m.g
Eutrema salsugineum
Thhalv10022373m.g
I
0.766
Thhalv10023873m.g
Eutrema salsugineum
Thhalv10023873m.g
I
0.809
Thhalv10024119m.g
Eutrema salsugineum
Thhalv10024119m.g
I
0.809
Thhalv10024162m.g
Eutrema salsugineum
Thhalv10024162m.g
I
0.723
gene04949-v1.0-hybrid
Fragaria vesca
gene04949-v1.0-hybrid
I
0.708
gene15899-v1.0-hybrid
Fragaria vesca
gene15899-v1.0-hybrid
N
0.745
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.854
gene22916-v1.0-hybrid
Fragaria vesca
gene22916-v1.0-hybrid
I
0.809
gene22967-v1.0-hybrid
Fragaria vesca
gene22967-v1.0-hybrid
I
0.872
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.830
GLYMA03G19880
Glycine max
GLYMA03G19880
N
0.723
GLYMA11G33460
Glycine max
GLYMA11G33460
I
0.844
GLYMA18G04760
Glycine max
GLYMA18G04760
I
0.830
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.787
Gorai.009G302800
Gossypium raimondii
Gorai.009G302800
N
0.702
Gorai.011G189000
Gossypium raimondii
Gorai.011G189000
N
0.702
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.809
Lus10022316.g
Linum usitatissimum
Lus10022316.g
I
0.702
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.787
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.787
LjSGA_024860.1
Lotus japonicus
LjSGA_024860.1
I
0.708
LjSGA_107301.1
Lotus japonicus
LjSGA_107301.1
I
0.702
LjSGA_126766.1
Lotus japonicus
LjSGA_126766.1
I
0.733
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.787
MDP0000846004
Malus domestica
MDP0000846004
I
0.894
MDP0000925348
Malus domestica
MDP0000925348
I
0.872
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.822
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.875
MTR_1g090783
Medicago truncatula
MTR_1g090783
N
0.708
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.851
mgf026186m
Mimulus guttatus
mgf026186m
I
0.818
GSMUA_Achr2G18400_001
Musa acuminata
GSMUA_Achr2G18400_001
N
0.723
GSMUA_Achr3G05500_001
Musa acuminata
GSMUA_Achr3G05500_001
I
0.800
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.872
POPTR_0013s00350
Populus trichocarpa
POPTR_0013s00350
I
0.894
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.872
Pm003257
Prunus mume
Pm003257
I
0.745
Pm004396
Prunus mume
Pm004396
I
0.911
PRUPE_ppa017207mg
Prunus persica
PRUPE_ppa017207mg
N
0.756
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.911
PRUPE_ppa019749mg
Prunus persica
PRUPE_ppa019749mg
I
0.745
30128.m008984
Ricinus communis
30128.m008984
I
0.812
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.894
SapurV1A.0442s0180
Salix purpurea
SapurV1A.0442s0180
I
0.851
SapurV1A.0442s0190
Salix purpurea
SapurV1A.0442s0190
I
0.851
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.787
TCM_025670
Theobroma cacao
TCM_025670
I
0.771
TCM_025671
Theobroma cacao
TCM_025671
I
0.787
TCM_025676
Theobroma cacao
TCM_025676
N
0.702
TCM_026842
Theobroma cacao
TCM_026842
I
0.872
TCM_026845
Theobroma cacao
TCM_026845
I
0.766
TCM_042799
Theobroma cacao
TCM_042799
I
0.723
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.894