fgeneshPB_pg.6__462 (Phycomyces blakesleeanus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 fgeneshPB_pg.6__462 T257364_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MEF2A
M03340_2.00 		Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM		 SELEX
Jolma et al.(2013)
MEF2A_1 		0.708 0.708
MEF2A
M07979_2.00 		Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha 		0.708 0.708
MEF2A
M08212_2.00 		Homo sapiens
CTAWWWWTAG
CTAWWWWTAG		 ChIP-seq
Contrino et al.(2012)
Mv88 		0.708 0.708
MEF2A
M08213_2.00 		Homo sapiens
AAAATAGM
KCTATTTT		 ChIP-seq
Contrino et al.(2012)
Mv90 		0.708 0.708
MEF2A
M09247_2.00 		Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH		 Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A 		0.708 0.708
Mef2a
M09255_2.00 		Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH		 Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A 		0.708 0.708
Mef2a
M09599_2.00 		Mus musculus
CYNDAAATAG
CTATTTHNRG		 Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529 		0.708 0.708
MEF2A
M10933_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AMEF2_Q6 		0.708 0.708
MEF2A
M10934_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMEF2_Q6 		0.708 0.708
MEF2A
M10935_2.00 		Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV		 Transfac
Matys et al.(2006)
V$MEF2_01 		0.708 0.708
MEF2A
M10936_2.00 		Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV		 Transfac
Matys et al.(2006)
V$MEF2_02 		0.708 0.708
MEF2A
M10937_2.00 		Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN		 Transfac
Matys et al.(2006)
V$MEF2_03 		0.708 0.708
MEF2A
M10938_2.00 		Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN		 Transfac
Matys et al.(2006)
V$MEF2_04 		0.708 0.708
MEF2A
M10939_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_05 		0.708 0.708
MEF2A
M10940_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_Q6 		0.708 0.708
MEF2A
M10941_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2_Q6_02 		0.708 0.708
MEF2A
M10942_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MMEF2_Q6 		0.708 0.708
MEF2A
M10943_2.00 		Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN		 Transfac
Matys et al.(2006)
V$RSRFC4_01 		0.708 0.708
MEF2A
M10944_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RSRFC4_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgeneshPB_pg.6__462 MADS box 10 58

Links

Other MADS box family TFs
Other Phycomyces blakesleeanus TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008571 Calypte anna Aan_R008571 I 0.708
ACRE_047770 Acremonium chrysogenum ACRE_047770 I 0.708
AOL_s00078g125 Arthrobotrys oligospora AOL_s00078g125 N 0.708
DOTSEDRAFT_71657 Dothistroma septosporum DOTSEDRAFT_71657 I 0.708
E5Q_06057 Mixia osmundae E5Q_06057 N 0.708
ENSAPLG00000007352 Anas platyrhynchos ENSAPLG00000007352 I 0.708
ENSCSAG00000016929 Chlorocebus sabaeus ENSCSAG00000016929 I 0.708
ENSFALG00000010303 Ficedula albicollis ENSFALG00000010303 I 0.708
ENSGALG00000007100 Gallus gallus ENSGALG00000007100 I 0.708
ENSGMOG00000015431 Gadus morhua ENSGMOG00000015431 I 0.708
ENSLACG00000001355 Latimeria chalumnae ENSLACG00000001355 I 0.708
ENSLOCG00000014408 Lepisosteus oculatus ENSLOCG00000014408 I 0.708
ENSMEUG00000013873 Macropus eugenii ENSMEUG00000013873 I 0.708
ENSNLEG00000000911 Nomascus leucogenys ENSNLEG00000000911 I 0.708
ENSOARG00000009878 Ovis aries ENSOARG00000009878 I 0.708
ENSONIG00000015126 Oreochromis niloticus ENSONIG00000015126 I 0.708
ENSP00000284368 Macaca fascicularis ENSP00000284368 I 0.708
ENSP00000396219-D2 Bos grunniens ENSP00000396219-D2 I 0.708
ENSPANG00000026183 Papio anubis ENSPANG00000026183 I 0.708
ENSPFOG00000019202 Poecilia formosa ENSPFOG00000019202 I 0.708
ENSPPYG00000006816 Pongo abelii ENSPPYG00000006816 I 0.708
ENSPSIG00000015011 Pelodiscus sinensis ENSPSIG00000015011 I 0.708
ENSSHAG00000016994 Sarcophilus harrisii ENSSHAG00000016994 I 0.708
ENSSSCG00000004815 Sus scrofa ENSSSCG00000004815 I 0.708
ENSSSCG00000025724 Sus scrofa ENSSSCG00000025724 I 0.708
ENSSTOG00000028856 Ictidomys tridecemlineatus ENSSTOG00000028856 I 0.708
ENSTNIG00000019230 Tetraodon nigroviridis ENSTNIG00000019230 I 0.708
ENSTSYG00000001620 Tarsius syrichta ENSTSYG00000001620 I 0.708
ENSXMAG00000003697 Xiphophorus maculatus ENSXMAG00000003697 I 0.708
estExt_fgeneshMC_pg.C_20010 Mucor circinelloides estExt_fgeneshMC_pg.C_20010 I 0.792
estExt_fgeneshPB_pg.C_10863 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_10863 I 0.771
e_gw1.10.299.1 Sporobolomyces roseus e_gw1.10.299.1 N 0.771
e_gw1.3.1235.1 Mucor circinelloides e_gw1.3.1235.1 I 0.750
e_gw1.8.501.1 Mucor circinelloides e_gw1.8.501.1 I 0.771
Gfo_R005864 Geospiza fortis Gfo_R005864 I 0.708
GLOINDRAFT_42742 Rhizophagus irregularis GLOINDRAFT_42742 I 0.708
gw1.3.599.1 Phycomyces blakesleeanus gw1.3.599.1 I 0.792
HelroG156791 Helobdella robusta HelroG156791 I 0.708
HelroG193589 Helobdella robusta HelroG193589 I 0.708
M437DRAFT_42083 Aureobasidium melanogenum M437DRAFT_42083 I 0.708
M438DRAFT_316511 Aureobasidium pullulans M438DRAFT_316511 I 0.708
MBM_03922 Marssonina brunnea MBM_03922 I 0.708
MEF2A Taeniopygia guttata ENSTGUG00000008733 I 0.708
MEF2A Tursiops truncatus ENSTTRG00000015831 I 0.708
MEF2A Vicugna pacos ENSVPAG00000011436 I 0.708
Mef2a Mus musculus ENSMUSG00000030557 D 0.708
MEF2A Homo sapiens ENSG00000068305 D 0.828
mef2a Xenopus tropicalis XB-GENE-487394 I 0.708
MEF2A Anolis carolinensis ENSACAG00000009923 I 0.708
MEF2A Bos taurus ENSBTAG00000010649 I 0.708
MEF2A Canis familiaris ENSCAFG00000010775 I 0.708
MEF2A Callithrix jacchus ENSCJAG00000017029 I 0.708
MEF2A Dasypus novemcinctus ENSDNOG00000018848 I 0.708
MEF2A Equus caballus ENSECAG00000011593 I 0.708
MEF2A Erinaceus europaeus ENSEEUG00000007138 I 0.708
MEF2A Echinops telfairi ENSETEG00000018987 I 0.708
MEF2A Felis catus ENSFCAG00000022495 I 0.708
Mef2a Rattus norvegicus ENSRNOG00000047756 I 0.708
MEF2A Gorilla gorilla ENSGGOG00000013064 I 0.708
MEF2A Loxodonta africana ENSLAFG00000004656 I 0.708
MEF2A Meleagris gallopavo ENSMGAG00000009283 I 0.708
MEF2A Myotis lucifugus ENSMLUG00000016420 I 0.708
MEF2A Macaca mulatta ENSMMUG00000018122 I 0.708
MEF2A Monodelphis domestica ENSMODG00000012725 I 0.708
MEF2A Ornithorhynchus anatinus ENSOANG00000000143 I 0.708
MEF2A Otolemur garnettii ENSOGAG00000008728 I 0.708
MEF2A Pan troglodytes ENSPTRG00000007496 I 0.708
mef2a.L Xenopus laevis XB-GENE-487398 I 0.708
mef2aa Takifugu rubripes ENSTRUG00000007090 I 0.708
mef2aa Oryzias latipes ENSORLG00000008489 I 0.708
mef2aa Gasterosteus aculeatus ENSGACG00000013182 I 0.708
mef2aa Danio rerio ENSDARG00000031756 I 0.708
MVLG_02620 Microbotryum violaceum MVLG_02620 N 0.729
Mycgr3G71585 Zymoseptoria tritici Mycgr3G71585 I 0.708
RHTO_02226 Rhodosporidium toruloides RHTO_02226 N 0.750
RO3G_02782 Rhizopus oryzae RO3G_02782 I 0.729
RO3G_03857 Rhizopus oryzae RO3G_03857 I 0.771
RO3G_06615 Rhizopus oryzae RO3G_06615 I 0.708
RO3G_15773 Rhizopus oryzae RO3G_15773 I 0.771
RTG_02132 Rhodotorula glutinis RTG_02132 N 0.750
S40288_07194 Stachybotrys chartarum S40288_07194 I 0.708
SEPMUDRAFT_148874 Sphaerulina musiva SEPMUDRAFT_148874 I 0.708
Tal_R009367 Tyto alba Tal_R009367 I 0.708