Cagra.12398s0004 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.12398s0004 T257679_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.12398s0004.1.p MADS box 16 63

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10010430m.g Capsella rubella Carubv10010430m.g N 0.938
Cagra.18025s0001 Capsella grandiflora Cagra.18025s0001 N 0.896
Carubv10002683m.g Capsella rubella Carubv10002683m.g N 0.875
Carubv10012214m.g Capsella rubella Carubv10012214m.g N 0.875
Carubv10010438m.g Capsella rubella Carubv10010438m.g N 0.854
Carubv10010833m.g Capsella rubella Carubv10010833m.g N 0.854
Carubv10002712m.g Capsella rubella Carubv10002712m.g N 0.833
Carubv10021362m.g Capsella rubella Carubv10021362m.g N 0.824
Carubv10002787m.g Capsella rubella Carubv10002787m.g N 0.818
Carubv10021446m.g Capsella rubella Carubv10021446m.g N 0.812
Cagra.5647s0017 Capsella grandiflora Cagra.5647s0017 N 0.792
Carubv10011216m.g Capsella rubella Carubv10011216m.g N 0.792
Carubv10021725m.g Capsella rubella Carubv10021725m.g N 0.792
Carubv10022123m.g Capsella rubella Carubv10022123m.g N 0.792
Carubv10021267m.g Capsella rubella Carubv10021267m.g N 0.778
Carubv10012479m.g Capsella rubella Carubv10012479m.g N 0.771
Carubv10022052m.g Capsella rubella Carubv10022052m.g N 0.750
Carubv10022431m.g Capsella rubella Carubv10022431m.g N 0.750
AGL64 Arabidopsis thaliana AT1G29962 N 0.729
AGL85 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002660 N 0.729
Bostr.15697s0292 Boechera stricta Bostr.15697s0292 N 0.729
Carubv10021425m.g Capsella rubella Carubv10021425m.g N 0.729