CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10002787m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10002787m.g
T257732_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10002787m
MADS box
1
33
KNGIYTKLCELSVLCDVNVAFLEYTGPGKPSTF
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.18025s0001
Capsella grandiflora
Cagra.18025s0001
N
0.909
Carubv10002683m.g
Capsella rubella
Carubv10002683m.g
N
0.909
Carubv10010430m.g
Capsella rubella
Carubv10010430m.g
N
0.909
Carubv10010438m.g
Capsella rubella
Carubv10010438m.g
N
0.879
Carubv10012214m.g
Capsella rubella
Carubv10012214m.g
N
0.879
Cagra.12398s0004
Capsella grandiflora
Cagra.12398s0004
N
0.818
Carubv10002712m.g
Capsella rubella
Carubv10002712m.g
N
0.818
Carubv10011216m.g
Capsella rubella
Carubv10011216m.g
N
0.758
Carubv10021362m.g
Capsella rubella
Carubv10021362m.g
N
0.758
Carubv10021446m.g
Capsella rubella
Carubv10021446m.g
N
0.758
Carubv10021725m.g
Capsella rubella
Carubv10021725m.g
N
0.758
Carubv10022123m.g
Capsella rubella
Carubv10022123m.g
N
0.758
Cagra.5647s0017
Capsella grandiflora
Cagra.5647s0017
N
0.727
Carubv10021425m.g
Capsella rubella
Carubv10021425m.g
N
0.727
Carubv10021838m.g
Capsella rubella
Carubv10021838m.g
N
0.727
Carubv10022052m.g
Capsella rubella
Carubv10022052m.g
N
0.727
Carubv10022431m.g
Capsella rubella
Carubv10022431m.g
N
0.727