CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003716m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10003716m.g
T257737_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003716m
MADS box
24
72
SSVSKKKTTMNLSLREQTMFKKASELSILCDIEVCVIYYGRDGELVKTW
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL105
Arabidopsis thaliana
AT5G37415
I
0.846
AGL53
Arabidopsis thaliana
AT5G27070
N
0.771
AGL54
Arabidopsis thaliana
AT5G27090
N
0.792
AGL89
Arabidopsis thaliana
AT5G27580
N
0.812
AGL93
Arabidopsis thaliana
AT5G26950
N
0.771
AT5G27944
Arabidopsis thaliana
AT5G27944
N
0.812
Bostr.29827s0112
Boechera stricta
Bostr.29827s0112
N
0.771
Cagra.29077s0001
Capsella grandiflora
Cagra.29077s0001
N
0.875
Carubv10003642m.g
Capsella rubella
Carubv10003642m.g
N
0.896
fgenesh2_kg.6__2748__AT5G27944.1
Arabidopsis lyrata
fgenesh2_kg.6__2748__AT5G27944.1
N
0.792
fgenesh2_kg.6__2751__AT5G27070.1
Arabidopsis lyrata
fgenesh2_kg.6__2751__AT5G27070.1
N
0.792
scaffold_602835.1
Arabidopsis lyrata
scaffold_602835.1
N
0.792